PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010910398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 435aa MW: 48204.2 Da PI: 5.0504 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.4 | 4.7e-07 | 352 | 392 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_010910398.1 352 ARHRRERISERLRMLQRLVPGG-----SKMDTASMLDEAANYLKFL 392 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.786 | 343 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-14 | 349 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-9 | 349 | 397 | No hit | No description |
SMART | SM00353 | 1.2E-12 | 349 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-11 | 351 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-4 | 353 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MDSLGWDSST DIRSDISSIP SCLWSNQYDN FSESNEDCSN TSEKVELDQA FFTSGLELQG 60 VQASEMSSSF DSVDEMVEMF APALDSINNN LDMDFLQRHE AINLADDSVP EKSGISTTWG 120 DALSSQLCSS LPLITRSKAV NPFDSLTKNF GSSEELRVFS DITNDEEGIS TIFSSGENIH 180 NLSYGGNTSS GESENHGSFN HHQSNRDEMA SASQSSSKPD QTQSGISKPD KVQAEEAKGK 240 PISTKRKLEE KNQYFCNLLQ LNSSNKEGGF HISFGNGRKP KKSRSEKRSG SSSIYFDHES 300 KYEPDTEAIA QVKEMIYRAA ALRPVNLGVE ETVEKPKRKN VRISSDPQTV AARHRRERIS 360 ERLRMLQRLV PGGSKMDTAS MLDEAANYLK FLKSQVKALE TLGSRLDSMN SATLPFPTPF 420 NQTSPMHTLF THPQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029119380.1 | 0.0 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 3e-62 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A2H3YFC1 | 0.0 | A0A2H3YFC1_PHODC; transcription factor bHLH87-like | ||||
STRING | XP_008797919.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-48 | bHLH family protein |
Publications ? help Back to Top | |||
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