PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010910398.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 435aa MW: 48204.2 Da PI: 5.0504

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010910398.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.7e-07	352	392	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_010910398.1 352 ARHRRERISERLRMLQRLVPGG-----SKMDTASMLDEAANYLKFL 392 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.786	343	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-14	349	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-9	349	397	No hit	No description
SMART	SM00353	1.2E-12	349	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-11	351	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-4	353	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDSLGWDSST DIRSDISSIP SCLWSNQYDN FSESNEDCSN TSEKVELDQA FFTSGLELQG 60 VQASEMSSSF DSVDEMVEMF APALDSINNN LDMDFLQRHE AINLADDSVP EKSGISTTWG 120 DALSSQLCSS LPLITRSKAV NPFDSLTKNF GSSEELRVFS DITNDEEGIS TIFSSGENIH 180 NLSYGGNTSS GESENHGSFN HHQSNRDEMA SASQSSSKPD QTQSGISKPD KVQAEEAKGK 240 PISTKRKLEE KNQYFCNLLQ LNSSNKEGGF HISFGNGRKP KKSRSEKRSG SSSIYFDHES 300 KYEPDTEAIA QVKEMIYRAA ALRPVNLGVE ETVEKPKRKN VRISSDPQTV AARHRRERIS 360 ERLRMLQRLV PGGSKMDTAS MLDEAANYLK FLKSQVKALE TLGSRLDSMN SATLPFPTPF 420 NQTSPMHTLF THPQP

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDSLGWDSST DIRSDISSIP SCLWSNQYDN FSESNEDCSN TSEKVELDQA FFTSGLELQG  60
VQASEMSSSF DSVDEMVEMF APALDSINNN LDMDFLQRHE AINLADDSVP EKSGISTTWG  120
DALSSQLCSS LPLITRSKAV NPFDSLTKNF GSSEELRVFS DITNDEEGIS TIFSSGENIH  180
NLSYGGNTSS GESENHGSFN HHQSNRDEMA SASQSSSKPD QTQSGISKPD KVQAEEAKGK  240
PISTKRKLEE KNQYFCNLLQ LNSSNKEGGF HISFGNGRKP KKSRSEKRSG SSSIYFDHES  300
KYEPDTEAIA QVKEMIYRAA ALRPVNLGVE ETVEKPKRKN VRISSDPQTV AARHRRERIS  360
ERLRMLQRLV PGGSKMDTAS MLDEAANYLK FLKSQVKALE TLGSRLDSMN SATLPFPTPF  420
NQTSPMHTLF THPQP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119380.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	3e-62	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2H3YFC1	0.0	A0A2H3YFC1_PHODC; transcription factor bHLH87-like
STRING	XP_008797919.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]