PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910378.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 294aa    MW: 30985.9 Da    PI: 6.8444
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910378.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA39.61.8e-121521733758
       CBFB_NFYA  37 pylheSRhkhAlrRpRgsgGrF 58 
                     pylheSRh+hAlrR+Rg+gGrF
  XP_010910378.1 152 PYLHESRHQHALRRARGCGGRF 173
                     9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005210.0018105176IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-10147173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.507152176IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MESRAECTDA VETNGQSTLP STINPQPWWR GPGFGGLSPA VLLDGASKST SVNLPVGGST  60
NKGGQAQSHD GADGMGDVSK VRQNVSTHRE GSFGQEPQHL QPVSPAMPPM MPEYFAPHTQ  120
LELGQSLACA TYSYSDPYFA GFMAPYGTQA LPYLHESRHQ HALRRARGCG GRFLNTKKAD  180
GNAATASPEN GANTGASLQR QSASSSGSEA LPSDCSGNPD SGSNMNEIKR PAVQGLCEAR  240
VYNNKNGGHQ QQSGFQLSSF HSKSSGRVEE GDCSGQQHGG ILVNQPPNWA VTIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910378.10.0nuclear transcription factor Y subunit A-9 isoform X2
TrEMBLA0A2H3XYY81e-138A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.11e-139(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-12nuclear factor Y, subunit A7