PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910264.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 671aa    MW: 74899.6 Da    PI: 5.1389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910264.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13472519355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++h   ErrRR+++N++f  Lr+l+P  +      K++Ka+iL  +++Y+k+L+
  XP_010910264.1 472 ASHVLSERRRREKLNEKFLALRSLVPFiS------KVDKASILGDTIQYLKELE 519
                     689999*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-4816183IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.657469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18471535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10472519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-13473516No hitNo description
Gene3DG3DSA:4.10.280.107.0E-18473529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-17475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEAAAGNPEE LPKKHLRKQL AAAVRNIQWS YAIFWSISTR HQGLLAWSDG YYNGDIKTRK  60
TTQPMEFKAD QIALQRSEQL RELYESLLAG DNEQQSTRPS ASLSPEDLTG TEWYYLVCMS  120
FTFSPGQGLP GKALASNQQI WLSNAQFADS KLFSRSLLAK SASIQTVVGI PYIGGVLELG  180
TTELQITTSF WELPISVCSE QSISSPPLAE KDEDILCPNL DHDIVDTTLE DHHLMADCLV  240
PLESGTAAIP FGIHSYGPDK ENDLIQDKVE EPHTNICKEL KIGSPDDSSN ECCANQQTND  300
SFRIEGLNGT SQVQNGWLMD DDISNGLHGS LNSNDCISQS FVNPRRFLSC PAGERIKNHV  360
LDSLQEGDYT KLISLDLDGE ESHYVKTLAA ILMNSKQPTS IPCFPSGARE SSFVVWRRSL  420
NTPKPLYTIS QRLLKQILVD TVWMHGGQPL KPQEEDGFCH KVWKSEGDDA SASHVLSERR  480
RREKLNEKFL ALRSLVPFIS KVDKASILGD TIQYLKELER RVEELESCRE LGEPEPRGRR  540
THPDIAERTS DNYGNKKIAN GTWPCANKRK VRDIDEAEVE RHCVLSKDGP VDVIVTVIEK  600
EVLLELQCPW RECLLLEIVD AISNLHLDPL SVQSSTVDNN LAVTIKAKFK GSVVASPGMI  660
KWTLQRVVGK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1491846177Transcription factor MYC3
4rqw_B2e-1491846177Transcription factor MYC3
4rs9_A2e-1491846177Transcription factor MYC3
4yz6_A2e-1491846177Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRE
2478483RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910264.10.0anthocyanin regulatory Lc protein isoform X2
TrEMBLA0A2H3ZYP60.0A0A2H3ZYP6_PHODC; transcription factor GLABRA 3
STRINGXP_008806796.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-135bHLH family protein