PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910261.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 680aa    MW: 75892.8 Da    PI: 5.0323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910261.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13481528355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++h   ErrRR+++N++f  Lr+l+P  +      K++Ka+iL  +++Y+k+L+
  XP_010910261.1 481 ASHVLSERRRREKLNEKFLALRSLVPFiS------KVDKASILGDTIQYLKELE 528
                     689999*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5216199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.657478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18480544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10481528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18482538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-13482525No hitNo description
SMARTSM003536.3E-17484533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MEAAAGNPEE LPKKHLRKQL AAAVRNIQWS YAIFWSISTR HQGLLAWSDG YYNGDIKTRK  60
TTQPMEFKAD QIALQRSEQL RELYESLLAG DNEQQSTRPS ASLSPEDLTG TEWYYLVCMS  120
FTFSPGQGLP GKALASNQQI WLSNAQFADS KLFSRSLLAK SASIQTVVGI PYIGGVLELG  180
TTELILEDPA LLQQITTSFW ELPISVCSEQ SISSPPLAEK DEDILCPNLD HDIVDTTLED  240
HHLMADCLVP LESGTAAIPF GIHSYGPDKE NDLIQDKVEE PHTNICKELK IGSPDDSSNE  300
CCANQQTNDS FRIEGLNGTS QVQNGWLMDD DISNGLHGSL NSNDCISQSF VNPRRFLSCP  360
AGERIKNHVL DSLQEGDYTK LISLDLDGEE SHYVKTLAAI LMNSKQPTSI PCFPSGARES  420
SFVVWRRSLN TPKPLYTISQ RLLKQILVDT VWMHGGQPLK PQEEDGFCHK VWKSEGDDAS  480
ASHVLSERRR REKLNEKFLA LRSLVPFISK VDKASILGDT IQYLKELERR VEELESCREL  540
GEPEPRGRRT HPDIAERTSD NYGNKKIANG TWPCANKRKV RDIDEAEVER HCVLSKDGPV  600
DVIVTVIEKE VLLELQCPWR ECLLLEIVDA ISNLHLDPLS VQSSTVDNNL AVTIKAKFKG  660
SVVASPGMIK WTLQRVVGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1691996192Transcription factor MYC3
4rqw_B2e-1691996192Transcription factor MYC3
4rs9_A2e-1691996192Transcription factor MYC3
4yz6_A2e-1691996192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486491ERRRRE
2487492RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910262.10.0anthocyanin regulatory Lc protein isoform X1
RefseqXP_010910263.10.0anthocyanin regulatory Lc protein isoform X1
RefseqXP_019703129.10.0anthocyanin regulatory Lc protein isoform X1
TrEMBLA0A2H3ZYP60.0A0A2H3ZYP6_PHODC; transcription factor GLABRA 3
STRINGXP_008806796.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-140bHLH family protein