PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010910241.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 890aa MW: 97320.6 Da PI: 6.7643

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010910241.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	758	780	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F+ + +L+ H+ H XP_010910241.1 758 HQCNICGLRFRLQAQLNGHLDWH 780 79*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.055	758	785	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	760	780	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
MRHLFGTWKG VFPSAPLQII EKELGFSPIV NGSSGAATSR PDSPTQHPPH SIHVNPKYLE 60 ARQRLQRSTR AKEIINDEIS RAVSSIDDAE SSDKAVIVGS TRQWRNLPTK MPNLRPQRVL 120 INHSIHEKKE FRDHELSSDV PVLSDPGVER LSDRLKEQDG LDKPCHGAGI NASEMHDRSI 180 QLTSNNWKNC EEEEYVWDDM NSRAIDDASN NSLIKGGWST NDEDKSANLQ KGKWMPPESK 240 HLFSHLNKTD SLSQMMKTAG REGRVPLLGE LEDHLQQCHA KHDADSGIRM ETSADSPYMG 300 RDPLEHPTSS ICGPLDVPHS MNRLNHRSSR ISSQSEGQPI SFSCGLSTSM SSSLVPGSSG 360 MSGQLRQQQL LPPLSFAHSP PSSAPLPHQK SHNSIECDLL RSNSFFPIGQ KPMHLAELLS 420 QAPDAPITQE SFPISAQSHP HHSHSPLTSK PPPSYPSQHL QNSSASGSLA PFAQVRHHLP 480 FLQQPQPHLS VQETKMQSQT SHQIKKSPPL FLSFGSHLLG LPGKNNSKNA AVEISDQPST 540 SNLLAAIVKS GLLPNHTMNT FQNLNMQPPL PSGPPPIQVV TSSVPSVTPA SISPLLTHDN 600 ISPLMLPSTR AMLPPLPPGP PPPSSLVHTN RETSNLAVPA TNPLSSLLSS LVAKGLISSP 660 ATELPAAASV QLPNKLGNQS SGFASSTSEQ ELPTLYTSTF HSLAAKEPSG TEEIAPTSAA 720 LLPSTVTLKD LLGIEFKPEI IRKFHPEVIG SLFDNLEHQC NICGLRFRLQ AQLNGHLDWH 780 DSKKSELSSF NRVSQKWYVS STSWVSGCVG PQYRPVELAS SVEEIVIMDE QYEPAVPADE 840 SQCICALCGE PFEDVYSAER DEWMYKGTVY LNLPKRQGDM GIMVHAKCMS

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

MRHLFGTWKG VFPSAPLQII EKELGFSPIV NGSSGAATSR PDSPTQHPPH SIHVNPKYLE  60
ARQRLQRSTR AKEIINDEIS RAVSSIDDAE SSDKAVIVGS TRQWRNLPTK MPNLRPQRVL  120
INHSIHEKKE FRDHELSSDV PVLSDPGVER LSDRLKEQDG LDKPCHGAGI NASEMHDRSI  180
QLTSNNWKNC EEEEYVWDDM NSRAIDDASN NSLIKGGWST NDEDKSANLQ KGKWMPPESK  240
HLFSHLNKTD SLSQMMKTAG REGRVPLLGE LEDHLQQCHA KHDADSGIRM ETSADSPYMG  300
RDPLEHPTSS ICGPLDVPHS MNRLNHRSSR ISSQSEGQPI SFSCGLSTSM SSSLVPGSSG  360
MSGQLRQQQL LPPLSFAHSP PSSAPLPHQK SHNSIECDLL RSNSFFPIGQ KPMHLAELLS  420
QAPDAPITQE SFPISAQSHP HHSHSPLTSK PPPSYPSQHL QNSSASGSLA PFAQVRHHLP  480
FLQQPQPHLS VQETKMQSQT SHQIKKSPPL FLSFGSHLLG LPGKNNSKNA AVEISDQPST  540
SNLLAAIVKS GLLPNHTMNT FQNLNMQPPL PSGPPPIQVV TSSVPSVTPA SISPLLTHDN  600
ISPLMLPSTR AMLPPLPPGP PPPSSLVHTN RETSNLAVPA TNPLSSLLSS LVAKGLISSP  660
ATELPAAASV QLPNKLGNQS SGFASSTSEQ ELPTLYTSTF HSLAAKEPSG TEEIAPTSAA  720
LLPSTVTLKD LLGIEFKPEI IRKFHPEVIG SLFDNLEHQC NICGLRFRLQ AQLNGHLDWH  780
DSKKSELSSF NRVSQKWYVS STSWVSGCVG PQYRPVELAS SVEEIVIMDE QYEPAVPADE  840
SQCICALCGE PFEDVYSAER DEWMYKGTVY LNLPKRQGDM GIMVHAKCMS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010910241.2	0.0	uncharacterized protein LOC105036179 isoform X2
TrEMBL	A0A2H3ZGW5	0.0	A0A2H3ZGW5_PHODC; polyadenylation and cleavage factor homolog 4-like isoform X2
STRING	XP_008813677.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8