PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010909975.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 597aa MW: 68950.8 Da PI: 7.0803

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909975.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.5	1.4e-15	16	87	18	90
FAR1 18 kskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +s k++ +g i r +vC keg++ ++k++ + ++++ +rtgC a l++k +++gk++vt++e +HnH+l+ XP_010909975.1 16 ESVKRRASGVISLRVYVCHKEGFHGNKKEE-WEVKNPKLYERTGCLAALTLKITNNGKYRVTDFEAKHNHPLV 87 4455688999**************9999.99999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-13	16	87	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-25	205	297	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.633	484	520	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-5	487	517	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0038	495	522	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MVLMTVGCRR IQYSEESVKR RASGVISLRV YVCHKEGFHG NKKEEWEVKN PKLYERTGCL 60 AALTLKITNN GKYRVTDFEA KHNHPLVIPN KAHMIKWRRI SKDRGVLAED SRMIPRADDE 120 VMNGHAGDHQ HFINPSQTYK NYLRSKRASA VLPGDAGAAL QYVQERQIDD PSFFYAVQLD 180 KEDQVANIFW ADGKSIIDYD YFGDVMCCDT TYRSNNYGRP FAQFIGVNHH MQTVFFGAAL 240 LYNETIESFK WMFETLKAAM SGKQPKVIWV EQSTEISDAI AAVWPGTVCH FSMWHVYHDS 300 AKHLSFAFQV SKTFALDFSK CVYEIEEEEE FQSLWKEMLE KYDLKDNQWL AKLYEDREKW 360 ALTHSQHIFC ADMKSTLRKE DLSTQLKQWL HPELDLLQFL KHYEKAIDDR RHAELQADFQ 420 ACQISPTIPP TRMLKQAANV YTPEVFKLFQ REFEMSMDCL VYTGGELGPI ADYKVAAEGD 480 PTEYVVRVDI SDGTLICSCK KFEFMGIQCC HVLKVLDIVN IKELPQRYIL KRWRKDAKAG 540 SMRDNCGFAF IGDSTSSKAK RYGSLCRIFN KIAARAAESL EAYTLIEGHL DQLMDHV

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MVLMTVGCRR IQYSEESVKR RASGVISLRV YVCHKEGFHG NKKEEWEVKN PKLYERTGCL  60
AALTLKITNN GKYRVTDFEA KHNHPLVIPN KAHMIKWRRI SKDRGVLAED SRMIPRADDE  120
VMNGHAGDHQ HFINPSQTYK NYLRSKRASA VLPGDAGAAL QYVQERQIDD PSFFYAVQLD  180
KEDQVANIFW ADGKSIIDYD YFGDVMCCDT TYRSNNYGRP FAQFIGVNHH MQTVFFGAAL  240
LYNETIESFK WMFETLKAAM SGKQPKVIWV EQSTEISDAI AAVWPGTVCH FSMWHVYHDS  300
AKHLSFAFQV SKTFALDFSK CVYEIEEEEE FQSLWKEMLE KYDLKDNQWL AKLYEDREKW  360
ALTHSQHIFC ADMKSTLRKE DLSTQLKQWL HPELDLLQFL KHYEKAIDDR RHAELQADFQ  420
ACQISPTIPP TRMLKQAANV YTPEVFKLFQ REFEMSMDCL VYTGGELGPI ADYKVAAEGD  480
PTEYVVRVDI SDGTLICSCK KFEFMGIQCC HVLKVLDIVN IKELPQRYIL KRWRKDAKAG  540
SMRDNCGFAF IGDSTSSKAK RYGSLCRIFN KIAARAAESL EAYTLIEGHL DQLMDHV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029117932.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3ZUX3	0.0	A0A2H3ZUX3_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008799178.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-116	FAR1-related sequence 5