PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909933.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 514aa MW: 56447 Da PI: 4.3834

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909933.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114	9.7e-36	33	124	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++++ ++sw + +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_010909933.1 33 FLSKTYDMVDDPATDAIVSWGAGNNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKT 118 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_010909933.1 119 INRRKP 124 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.5E-39	27	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.26E-35	28	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.0E-61	29	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.9E-31	33	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-19	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-19	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	72	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-19	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MGDNAGNEGG AADVPPAASG ANAGLGGNAP PPFLSKTYDM VDDPATDAIV SWGAGNNSFV 60 VWNTPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVNPDR WEFANEGFLR GQKHLLKTIN 120 RRKPGQTPSQ AHQPQVQSTN LAACVEVGKF GLEEEIERLK RDKNVLMQEL VRLRQQQQGT 180 DRQLQTLGQR LKGMEQRQQQ MMSFLAKAMQ SPGFLAQLVQ QNDSNWHIAG MNKKRRLPMQ 240 DNKQDGESLS PDGQIIKYQP LMNEAAKVML MQILNLDTSP RLESLGNSEN FLIENIALSP 300 QAFDGRSSSN QNLGVTLSEV PTTSGTAFLP PSSGFSAICS SSMPSEIQSS AGVADMVTAT 360 ELADLSVLSR VPDAIDPQLP DTSIPEFSQM EGVVPNGNAV GISSGVYVQP EAENIYMNPI 420 SAGMDEQVSI ETEKFSSDTD VDIFTDEEQK LPSINDSFWE QFLIASPLSG DAEDVDSSIY 480 EAKEMQPEQE NGWDNAQSMD HLTEKMGLLA SQRK

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MGDNAGNEGG AADVPPAASG ANAGLGGNAP PPFLSKTYDM VDDPATDAIV SWGAGNNSFV  60
VWNTPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVNPDR WEFANEGFLR GQKHLLKTIN  120
RRKPGQTPSQ AHQPQVQSTN LAACVEVGKF GLEEEIERLK RDKNVLMQEL VRLRQQQQGT  180
DRQLQTLGQR LKGMEQRQQQ MMSFLAKAMQ SPGFLAQLVQ QNDSNWHIAG MNKKRRLPMQ  240
DNKQDGESLS PDGQIIKYQP LMNEAAKVML MQILNLDTSP RLESLGNSEN FLIENIALSP  300
QAFDGRSSSN QNLGVTLSEV PTTSGTAFLP PSSGFSAICS SSMPSEIQSS AGVADMVTAT  360
ELADLSVLSR VPDAIDPQLP DTSIPEFSQM EGVVPNGNAV GISSGVYVQP EAENIYMNPI  420
SAGMDEQVSI ETEKFSSDTD VDIFTDEEQK LPSINDSFWE QFLIASPLSG DAEDVDSSIY  480
EAKEMQPEQE NGWDNAQSMD HLTEKMGLLA SQRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-26	10	122	10	129	Heat shock factor protein 1
5d5v_B	1e-26	10	122	10	129	Heat shock factor protein 1
5d5v_D	1e-26	10	122	10	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909933.1	0.0	heat stress transcription factor A-1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3X3N4	0.0	A0A2H3X3N4_PHODC; heat stress transcription factor A-1-like
STRING	XP_008777830.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-123	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]