PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010909854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 448aa MW: 49111.9 Da PI: 6.7957 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 310 | 342 | 17 | 54 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L XP_010909854.1 310 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 342 55666677777776.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.668 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-10 | 303 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.24E-5 | 303 | 346 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-7 | 307 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MAEEFQTGIC SSGSWWSTAR TGSFDGPMLS TSVSCSTEFT GIGGSFNWPV AADAVEAESR 60 SSDESPGFGL SSPSINWHQP FFTTAGRAET NLHALLQEDM NSRPNHPQEP VIESNQTHMN 120 VESSSFNLLK DLNQGLIQDQ HHFSSGVNGY PFFPTSFGLP PTLLQGLFEP ELKPQQSFSN 180 QQMNSSLSYQ GGLNESLQSQ AAKLPQFNMA LPLKQQFHFT NSTPFWNPSA TATNETTSSL 240 YSSTPTQIAP HAFKGKTNCN NLPVKSNSEG AGVSSSNAIK KSSTEQAFKK PRIETPSPLP 300 TFKVRKEKLG DRVTALQQLV SPFGKTDTAS VLHEAIEYIK FLHEQVGVSL SLNTLLSGKR 360 ILPDLSLYKR DLYSLILVIS WQVLSAPYWK NGHQSQHSQN LDKTKDGEGP KLDLKSRGLC 420 LVPMSSTFAV ASETPVDFWT PTFGGTYR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019703011.1 | 0.0 | transcription factor bHLH112 isoform X3 | ||||
TrEMBL | A0A3Q0IGD5 | 0.0 | A0A3Q0IGD5_PHODC; transcription factor bHLH112-like | ||||
STRING | XP_008810246.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.1 | 4e-51 | bHLH family protein |