PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909816.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 437aa    MW: 47200.8 Da    PI: 7.042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909816.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12270315454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk L
  XP_010909816.1 270 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKVL 315
                     799***********************6.....4***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-3834201IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.49E-18264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.085266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-15269320No hitNo description
PfamPF000103.7E-10270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-18270333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEELISPSSS CSPSPPPPFL SIPTVQTAAV GPNLQQRLQY LLHARSEWWA YAIFWRASPD  60
HHLLSFGEGH FRGTRDVDRK PHGLRSRVGG IQALLSEVTG TTAGDIASDG DDVEWFYVVS  120
LTRSFAAQEP VLPARAYGSL APVWVAGAHA LQTCGCDRAR EAQLHGIETL VCVPLSGGVL  180
ELGSSDLIGE NWVLVQQAKA ILSAPDDAIV GPMVPAPPLV MNKVAGAGIT GLSSSVDSEH  240
SDSEGALMME QRRPKKRGRK PGTGRETPVN HVEAERQRRE KLNHRFYALR SVVPNVSRMD  300
KASLLADAVS YIKVLRAKVE ELEAEAKRIK KEVIGDQGVG GAATTSTTTT VSSGPLTMEL  360
EVKMLGPDAL IRVHSDNLNH PTAKLMGALR DLEVNVHHAS VSTVKEVMLQ DVVVRVPYAL  420
QGDDSLRAAL LSRLEKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24342039193Transcription factor MYC3
4rqw_B2e-24342039193Transcription factor MYC3
4rs9_A2e-24342039193Transcription factor MYC3
4yz6_A2e-24342039193Transcription factor MYC3
5gnj_A2e-25264333271Transcription factor MYC2
5gnj_B2e-25264333271Transcription factor MYC2
5gnj_E2e-25264333271Transcription factor MYC2
5gnj_F2e-25264333271Transcription factor MYC2
5gnj_G2e-25264333271Transcription factor MYC2
5gnj_I2e-25264333271Transcription factor MYC2
5gnj_M2e-25264333271Transcription factor MYC2
5gnj_N2e-25264333271Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251259RRPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909816.10.0transcription factor MYC2
TrEMBLA0A2H3X8N30.0A0A2H3X8N3_PHODC; transcription factor MYC2-like
STRINGXP_008780029.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-63bHLH family protein