PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38650.5 Da PI: 6.5198 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 75.8 | 1e-23 | 17 | 90 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127 +e++ yfF++r +ky++g+r+ ++ gyWka+g++k++++ ++elvg+kktLv+y+g +++g+ktdW+m+ey XP_010909714.1 17 GEEKFYFFTSRTRKYPNGSRPACTAGGGYWKAKGSEKKIYN-DDELVGVKKTLVYYRGkAKKNGVKTDWTMQEYI 90 56788************************************.999***********99456789**********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.895 | 1 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-27 | 15 | 115 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-9 | 21 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MVKRAFRSFG RNYELSGEEK FYFFTSRTRK YPNGSRPACT AGGGYWKAKG SEKKIYNDDE 60 LVGVKKTLVY YRGKAKKNGV KTDWTMQEYI SEITTCKSGD SMKLDDWVLC CIHKKRGAVD 120 NPHKLQKISQ AQSDMPTEQY INNNQSYQTF IDSNGSYGNV IMAQLLVAAP DMQITEFNGS 180 MVPPLAVEPS VQITPSIQST ELKDMVASSA IASREAYAEL MDNHGYMVQK PAISPTESMT 240 NFNYMAPRFV AAPIEQMIDF NDMIQLSEIA NFNTMRLPSP YAPMIEYNGI MSIRNNHSTE 300 QGFQQNLSDA TTSGRDHVDQ FEMAYGERDS HRSNETTLLS ASN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-29 | 12 | 119 | 64 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-29 | 12 | 119 | 64 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-29 | 12 | 119 | 64 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-29 | 12 | 119 | 64 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-29 | 12 | 119 | 67 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-29 | 12 | 119 | 64 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-29 | 12 | 119 | 64 | 169 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909714.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-32 | NAC-like, activated by AP3/PI |