PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909711.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 498aa    MW: 56068.9 Da    PI: 4.3842
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909711.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.42.6e-40311582127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     ppGf F+P deel+  yL +k++g++l   +v+k+v++y++ P++  ++++  +e++ yfF++r +ky++g+r+ ra+  gyWkatg++k++++ 
  XP_010909711.1  31 PPGFNFNPDDEELIRLYLDRKIKGQPLLY-NVFKDVNLYDYYPEEQAENYELsGEEKFYFFTSRTRKYPNGSRPARAAGGGYWKATGSEKKIYND 124
                     9*************************888.99*************9854444266788************************************* PP

             NAM  96 kgelvglkktLvfykg..rapkgektdWvmheyr 127
                     ++elvg+kktLv+y+g  ++++g+ktdW+m+ey 
  XP_010909711.1 125 DDELVGVKKTLVYYRGkaKENDGVKTDWIMQEYI 158
                     **************7733667899*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-4626183IPR003441NAC domain
PROSITE profilePS5100547.21630183IPR003441NAC domain
PfamPF023658.6E-2131157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEMDPQNIEA VIHQIHGVPE GENSGPSLRF PPGFNFNPDD EELIRLYLDR KIKGQPLLYN  60
VFKDVNLYDY YPEEQAENYE LSGEEKFYFF TSRTRKYPNG SRPARAAGGG YWKATGSEKK  120
IYNDDDELVG VKKTLVYYRG KAKENDGVKT DWIMQEYISE ITTCKPGDSM KLDDWVLCCI  180
HKKRGAVDNP HKLQNISQAQ SDMPTEQDAK NNQSYQTYID SNGGYGNAIM VQRLVAAPDM  240
QITEFNGSMV PSLAAEPSVQ ITPSMQLTEL NDMVAPSIIA PSDQMIGSNG MLQQFAVATR  300
MQMTEFNGLF QPSAIAPSGQ MIDFNRRMPQ LGEAYAELMD NHDCMVQKSV ISPTEPMTDF  360
NYMAPRFAAA PIEQMMGFYD MTQLSEIADF NAMRQPSPPM TEHNGIMSIC NNHSTGQGFQ  420
QNLSNAMISG KDHVDQFGMA YGERDEVIDP MKLLCYEPAI EIDDVLSDSI EPKELDADEH  480
SRHDVGCRHA EDFTKLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-402818715169NO APICAL MERISTEM PROTEIN
1ut4_B4e-402818715169NO APICAL MERISTEM PROTEIN
1ut7_A4e-402818715169NO APICAL MERISTEM PROTEIN
1ut7_B4e-402818715169NO APICAL MERISTEM PROTEIN
3swm_A5e-402818718172NAC domain-containing protein 19
3swm_B5e-402818718172NAC domain-containing protein 19
3swm_C5e-402818718172NAC domain-containing protein 19
3swm_D5e-402818718172NAC domain-containing protein 19
3swp_A5e-402818718172NAC domain-containing protein 19
3swp_B5e-402818718172NAC domain-containing protein 19
3swp_C5e-402818718172NAC domain-containing protein 19
3swp_D5e-402818718172NAC domain-containing protein 19
4dul_A4e-402818715169NAC domain-containing protein 19
4dul_B4e-402818715169NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909712.10.0NAC domain-containing protein 78 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-46NAC domain containing protein 32