PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909695.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 310aa    MW: 33757.7 Da    PI: 8.0213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909695.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++++++G+  +W + +++ g++R++k+c++rw++yl
   XP_010909695.1 14 RGPWSPEEDAVLKNYIEKHGTVgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89******************879************************97 PP
2Myb_DNA-binding35.91.8e-1170111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +T eEd  +  + ++ G++ W+ Ia+++  gRt++++k++w++
   XP_010909695.1  70 GFTGEEDIAICTLYNKIGSR-WSVIASKLR-GRTDNDVKNYWNT 111
                      5899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.697966IPR017930Myb domain
SuperFamilySSF466891.64E-2611109IPR009057Homeodomain-like
SMARTSM007172.7E-111364IPR001005SANT/Myb domain
PfamPF002491.0E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-231569IPR009057Homeodomain-like
CDDcd001673.21E-91662No hitNo description
SMARTSM007174.3E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129413.08667117IPR017930Myb domain
PfamPF002495.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2270118IPR009057Homeodomain-like
CDDcd001671.50E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAVLKNYIE KHGTVGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTGEEDIAIC TLYNKIGSRW SVIASKLRGR TDNDVKNYWN TKLKKKMING  120
QISLPTNITT PSSPSPSTST STSTSRIHSP APPPQPPLLP ATATNTQSYN GAADFSVRLD  180
TRLGTSFGFP YKLYSEMAQF SMMGLMDQRD FSGSMSVSPS EDISAASSSS ITVDNSCSSN  240
GYVNWSTDGV GGDDAFLSEL GFGPTGDFFG GYGSQERMGE VSPYCYSDLA TIWAASETKP  300
QEFYQSVAYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909695.10.0transcription factor RAX2
TrEMBLA0A2H3YK751e-127A0A2H3YK75_PHODC; transcription factor MYB63-like
STRINGXP_008799755.11e-128(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-70myb domain protein 84