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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 156aa MW: 16692.8 Da PI: 7.0544 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F ++ L H++ H XP_010909496.1 35 FPCTYCSRRFFTSQALGGHQNAH 57 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.05E-6 | 33 | 62 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 33 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.3E-6 | 34 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.344 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MAEPSNRYYD FLKPPAAEEP TAAAVGRPPE ALRTFPCTYC SRRFFTSQAL GGHQNAHKKE 60 RAAGSRKAPA SSPSSSSTVV TTDTAILHHP GLPPRPSPSF PWFEPPPPPQ PYFYVYGPPP 120 PSPPPMSAPL ASATEVSSFA SAPADLDLDL DLSLHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909496.1 | 1e-106 | zinc finger protein KNUCKLES-like | ||||
TrEMBL | A0A2H3YMW3 | 7e-52 | A0A2H3YMW3_PHODC; zinc finger protein KNUCKLES-like | ||||
STRING | XP_008801133.1 | 1e-52 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 2e-14 | C2H2 family protein |