PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909460.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 702aa    MW: 75352.9 Da    PI: 7.3785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909460.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.3e-16405451455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  XP_010909460.1 405 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 451
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-20398459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-20399463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.641401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-17404455No hitNo description
PfamPF000105.6E-14405451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MAVEQRPDSE FVELLWENGQ IVMHGQSNRP RKSFFSTTFS RAQEKDSRDA VISKTGQIEA  60
MDPLVNDFSP TEASGNAGLN AQDDDTVPWI NYSIEDSLQN DYCQDYMLEF PGASLNSVST  120
HTETVLADRS HGFTQTSAKS SRNVEHGRTC EQLAGGSDPS RIKCSQLFQL SPERRSSAPS  180
MKSRATELST RATSSTHHGL AGYLLSSRLE KQGLASSTLS QSSGSIGLTN FSHFSGPAAL  240
AKANLLSLDR LRNNEKASTT TSSNPMESTS GFLATPGLAS AAPKVERRST TKPQQERVSV  300
EKPDADHDGN VHNNNSIVPD CVKRQLSGRN ETEKGPEAAV ASSSVCSGNG AGAASNDPKH  360
RAKRKNYEGE ESGNQSEDHE DESMGLKKSA TVRGTSTKRS RAAEVHNLSE RRRRDRINEK  420
MRALQELIPN CNKVDKASML DEAIEYLKSL QLQVQFLTQI MSMGSGSCML PLIPPAGIQQ  480
HMRMPPMAHL SQMGVGMGMG MRLGYGMGML DMNGSASCPL LPLPPMHGPQ FPFPSIPGTQ  540
GLHGMPGSTG LPMFGIPGQG LPASMPHIPP LGSPSGLSAT PDSMPGSAGM TNNPLPVTDT  600
SPSSTSKDQH HRSLDXEKIQ KTRTDDAQIK NSTQEAKESV KKSALVQMSN QTLHATGNGV  660
QAKKGVHPPA QLVSGTHDMV GRSIHAEIGL YSERTCTYAG DG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409414ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909460.20.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1
TrEMBLA0A3Q0IDA00.0A0A3Q0IDA0_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
STRINGXP_008800313.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-44phytochrome interacting factor 3