PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909139.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 731aa    MW: 80654.9 Da    PI: 9.4526
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909139.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.28.2e-22640720186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e ++Li++r e+++r+r+ k+++ lWee+s  + ++g++r+p qCk+ w +l ++y+ +k +ek+r     +++pyf++l+
  XP_010909139.1 640 KWKPEEMKQLIKMRGELDNRFRTVKARMILWEEISVSLLKHGVNRTPAQCKSLWASLVQKYEGCKSNEKSR-----KSWPYFTSLD 720
                     7********************************************************************96.....56*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.6E-359180IPR001279Metallo-beta-lactamase
SuperFamilySSF562818.25E-4415345IPR001279Metallo-beta-lactamase
PfamPF075211.4E-5288317IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.049633697IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-6636699IPR009057Homeodomain-like
SMARTSM007173.2E-4637699IPR001005SANT/Myb domain
PfamPF138371.1E-17638722No hitNo description
CDDcd122033.84E-21639704No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MATRITLVIP ALDSHTPIFA SSFTMELIKK RLKEFGIFVL SRLRLFTIRK KFLAGPFEVE  60
PIRVTHSIPD CCGLVLRCSD GTILHTGDWK IDESPLDGKI FDRETLEDLS KEGVTLMMSD  120
STNVLSPGRS VSEAVVADAL LRHISAAKGR VIATQFASNI HRLGSVKAAA DLTGRKLVFV  180
GMSLRTYLDA AFKDGKAPMD PSTLVKVEDI DGYAPKDLLI VTTGSQGEPR SALNLASFGS  240
SHSLKLGKDD VILYSAKVIP GNETRVMKML NRISDRGPTI VMGKNSGLHT SGHGYRGELE  300
EVLRIVKPQH FLPIHGELFF LKEHELLGRS TGIRHTAVIK NGEMLGVSHL RNRRVLSNGF  360
ASLGKEELQL MYSDGDKAFG TSTELCIDER LRIATDGIIV VSMEVLRPQN VNGSSQTCLK  420
GKIRITTRCL WLDKGKLLDA LYKAAHAALS SCPVSCPLAH MERIVSEVLR KIVRKYSSRR  480
PEVIAVAVEN TVGVLSEELR SRLLGKSHGG FGLSALGQRA NIHLRKVSSS KFEEDTDSMD  540
VTENLTEDES EGDGADLEQP RTEDAITNNL GESSSHASTK LEDLLKSLKG SSAVQVPKVA  600
NSFVLEENLK LSKDGKVGNR ENIKPSDPEP VTTKPAKRNK WKPEEMKQLI KMRGELDNRF  660
RTVKARMILW EEISVSLLKH GVNRTPAQCK SLWASLVQKY EGCKSNEKSR KSWPYFTSLD  720
EILSVHEGAT K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-6117489104560RIBONUCLEASE J
5a0t_B3e-6117489104560RIBONUCLEASE J
5a0v_A3e-6117489104560RIBONUCLEASE J
5a0v_B3e-6117489104560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909139.10.0ribonuclease J isoform X3
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2H3ZCK60.0A0A2H3ZCK6_PHODC; ribonuclease J
STRINGXP_008811801.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]