PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909136.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 884aa    MW: 97570.4 Da    PI: 9.0119
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909136.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.81.1e-21793873186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e ++Li++r e+++r+r+ k+++ lWee+s  + ++g++r+p qCk+ w +l ++y+ +k +ek+r     +++pyf++l+
  XP_010909136.1 793 KWKPEEMKQLIKMRGELDNRFRTVKARMILWEEISVSLLKHGVNRTPAQCKSLWASLVQKYEGCKSNEKSR-----KSWPYFTSLD 873
                     7********************************************************************96.....56*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.107.8E-6278333IPR001279Metallo-beta-lactamase
SuperFamilySSF562816.57E-6679498IPR001279Metallo-beta-lactamase
SMARTSM008493.1E-1791293IPR001279Metallo-beta-lactamase
PfamPF127062.5E-7103243IPR001279Metallo-beta-lactamase
PfamPF075211.7E-5441470IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.049786850IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-6789852IPR009057Homeodomain-like
SMARTSM007173.2E-4790852IPR001005SANT/Myb domain
PfamPF138371.5E-17791875No hitNo description
CDDcd122032.43E-21792857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MVCLSVLPSL CPCGLSGRPR LPKSIVRCSL GSSSSVPGAQ ELEVSRRKSR RTEGVRKSME  60
DPVQRKLEQF YEGLDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDEFGV  120
QKIVPDTTFI KRWSHKIEAV VITHGHEDHI VSASYCSVKQ VIPALDSHTP IFASSFTMEL  180
IKKRLKEFGI FVLSRLRLFT IRKKFLAGPF EVEPIRVTHS IPDCCGLVLR CSDGTILHTG  240
DWKIDESPLD GKIFDRETLE DLSKEGVTLM MSDSTNVLSP GRSVSEAVVA DALLRHISAA  300
KGRVIATQFA SNIHRLGSVK AAADLTGRKL VFVGMSLRTY LDAAFKDGKA PMDPSTLVKV  360
EDIDGYAPKD LLIVTTGSQG EPRSALNLAS FGSSHSLKLG KDDVILYSAK VIPGNETRVM  420
KMLNRISDRG PTIVMGKNSG LHTSGHGYRG ELEEVLRIVK PQHFLPIHGE LFFLKEHELL  480
GRSTGIRHTA VIKNGEMLGV SHLRNRRVLS NGFASLGKEE LQLMYSDGDK AFGTSTELCI  540
DERLRIATDG IIVVSMEVLR PQNVNGSSQT CLKGKIRITT RCLWLDKGKL LDALYKAAHA  600
ALSSCPVSCP LAHMERIVSE VLRKIVRKYS SRRPEVIAVA VENTVGVLSE ELRSRLLGKS  660
HGGFGLSALG QRANIHLRKV SSSKFEEDTD SMDVTENLTE DESEGDGADL EQPRTEDAIT  720
NNLGESSSHA STKLEDLLKS LKGSSAVQVP KVANSFVLEE NLKLSKDGKV GNRENIKPSD  780
PEPVTTKPAK RNKWKPEEMK QLIKMRGELD NRFRTVKARM ILWEEISVSL LKHGVNRTPA  840
QCKSLWASLV QKYEGCKSNE KSRKSWPYFT SLDEILSVHE GATK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-837964219560RIBONUCLEASE J
5a0t_B3e-837964219560RIBONUCLEASE J
5a0v_A3e-837964219560RIBONUCLEASE J
5a0v_B3e-837964219560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909137.10.0ribonuclease J isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2H3ZCK60.0A0A2H3ZCK6_PHODC; ribonuclease J
STRINGXP_008811801.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]