PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909047.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 289aa    MW: 30604.8 Da    PI: 7.5958
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909047.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA39.32.1e-121521733758
       CBFB_NFYA  37 pylheSRhkhAlrRpRgsgGrF 58 
                     pylheSRh hA+rR+Rg+gGrF
  XP_010909047.1 152 PYLHESRHLHAMRRARGCGGRF 173
                     9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.2E-5105176IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-10151173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.85152176IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESRAEGTNT VDANGQGALP STINAQPWWR GPGFGVISPS ILADSASKSA SVNLPVGGAR  60
NKGGQAQSHD RADGTGDVSK EMQNIGSQRD GSFGQEHHHL QPVSSTMPPM MPEYLAPHTQ  120
LELGQSIACA TYSYSDPYLS RVMAPYGTQA LPYLHESRHL HAMRRARGCG GRFLNTKKAE  180
ANAAITNPEN GGNTGASIPT QSASSSASPV LPSNCPGSNM NEIKRPVVQD ICEAQAYTNG  240
NDGYKQQSGF QLSSFHSKSG ERVEEGDCSG QQRGGILVNR PPNRAVAIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909047.10.0nuclear transcription factor Y subunit A-9 isoform X3
TrEMBLA0A2H3XYY81e-176A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.11e-177(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-13nuclear factor Y, subunit A9