PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010908839.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 867aa MW: 98963.3 Da PI: 6.1997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908839.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.7	7e-17	106	189	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +vGF v ++ks+ + + g + + +vC+k gk + + ++r++ +t+C+a++ vk++ dg ++ + +leHnH+++ XP_010908839.1 106 NFYKRYALHVGFGVAVKKSSFT-TYGLCRRLVLVCTKGGKGRANACY-----QSRPTAKTNCQAMIIVKLWGDGLLHLVEANLEHNHAVS 189 6**************99998.7888************9999.....99*******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00018	0	66	78	IPR018247	EF-Hand 1, calcium-binding site
Pfam	PF03101	5.0E-15	106	190	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-31	292	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	579	615	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	579	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-4	590	617	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MESRYNQEKE ILLMNGDAYL DKNCNEDEVN DRTTTEEDET SQNLLADSIN QEPMDEGKTA 60 VAPENDDDDG GKMDKAELEE GHKVTGLDDR TPQLGMVFKS YEEVVNFYKR YALHVGFGVA 120 VKKSSFTTYG LCRRLVLVCT KGGKGRANAC YQSRPTAKTN CQAMIIVKLW GDGLLHLVEA 180 NLEHNHAVSP STARFLRCYK KMSSGMTKDL AVRAAGHEDL LFGDKECVNS IEGGRLKLGE 240 GDDEAILQFF ARMQTKNPNF FYLLDLDVEG HMRNVFWADS RSRAAYQYFS DVVYFDTTCL 300 KNKYDIPLAL FVGVNHHGQL VLLGCGLVSD ESTENYLWLF KAWLTCMRGC PPNAIIIDEC 360 RAIQGAVADV FPEACHRICL WHIMKNVQQN LSGFEEYKIL KKELKKVVYD SLRVNEFEEG 420 WRDLMKRYGL EGSEWLNILY ENRQLWAPVF LKNTFWAGMS IARHKESITT FFEGCVYPGT 480 SLKCFLSNYE MVLQTKYEME ARADLESFHE GRVFVTKLHM EEHLSKIYTL NMFKKFQDEL 540 KAIVYCQVSL VKVDGPISTF EVKECAFMEG GEKAQDRNYE VLYNVDEFDI ECICGSFQFR 600 GILCRHALSV LKLQQVYEIP AQYILQRWTK DLKQLFALDR YSKDVASNNR MERYDYLSMR 660 CLQLVEVGMI SEEKYHLALK LLREVEKSLL DDNMCRDLQR RLLPFETRSN ASDENHLASQ 720 LGIVEGNKIP NSLPAKRRGR PPKKRKEDSN TEMISSPSNQ KDSLRASSDG GQSNVFQAAS 780 TASHLGSHIR THGGVDLMEE VNPNDLSFGS HFGLQANHQH HLGNQLQSAN LLQGQFGQQT 840 VGNSSGMQWI YQQMLQEDHA PFGRRTG

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MESRYNQEKE ILLMNGDAYL DKNCNEDEVN DRTTTEEDET SQNLLADSIN QEPMDEGKTA  60
VAPENDDDDG GKMDKAELEE GHKVTGLDDR TPQLGMVFKS YEEVVNFYKR YALHVGFGVA  120
VKKSSFTTYG LCRRLVLVCT KGGKGRANAC YQSRPTAKTN CQAMIIVKLW GDGLLHLVEA  180
NLEHNHAVSP STARFLRCYK KMSSGMTKDL AVRAAGHEDL LFGDKECVNS IEGGRLKLGE  240
GDDEAILQFF ARMQTKNPNF FYLLDLDVEG HMRNVFWADS RSRAAYQYFS DVVYFDTTCL  300
KNKYDIPLAL FVGVNHHGQL VLLGCGLVSD ESTENYLWLF KAWLTCMRGC PPNAIIIDEC  360
RAIQGAVADV FPEACHRICL WHIMKNVQQN LSGFEEYKIL KKELKKVVYD SLRVNEFEEG  420
WRDLMKRYGL EGSEWLNILY ENRQLWAPVF LKNTFWAGMS IARHKESITT FFEGCVYPGT  480
SLKCFLSNYE MVLQTKYEME ARADLESFHE GRVFVTKLHM EEHLSKIYTL NMFKKFQDEL  540
KAIVYCQVSL VKVDGPISTF EVKECAFMEG GEKAQDRNYE VLYNVDEFDI ECICGSFQFR  600
GILCRHALSV LKLQQVYEIP AQYILQRWTK DLKQLFALDR YSKDVASNNR MERYDYLSMR  660
CLQLVEVGMI SEEKYHLALK LLREVEKSLL DDNMCRDLQR RLLPFETRSN ASDENHLASQ  720
LGIVEGNKIP NSLPAKRRGR PPKKRKEDSN TEMISSPSNQ KDSLRASSDG GQSNVFQAAS  780
TASHLGSHIR THGGVDLMEE VNPNDLSFGS HFGLQANHQH HLGNQLQSAN LLQGQFGQQT  840
VGNSSGMQWI YQQMLQEDHA PFGRRTG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908809.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_010908823.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_019704280.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_029118156.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBL	A0A2H3XSP2	0.0	A0A2H3XSP2_PHODC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRING	XP_008788240.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-134	FAR1-related sequence 6