PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 681aa MW: 77071.8 Da PI: 6.0393 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 3.9e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v XP_010908787.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDRKVS 99 79****************************.99**************95334455777************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g++tdWvmheyrl XP_010908787.1 100 S-QRRAVGTKKTLVYYRGRAPHGSRTDWVMHEYRL 133 9.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.709 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MAPVTLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVSS QRRAVGTKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDEKECET ASGLQDAYAL CRIFKKSAPG PKIIEHYGAP YEEHSEWMSN 180 DRSPTVDLSS DGRGEDLDSC AYPFPRGTCS SEMIHGASFN ASASIDSKWM QFLNEETFAS 240 SSSFYHLPSF SYVPSKVDVA SDCARLQHTL SLPPLETEDF PQLDLADSKI LHSGRLQGNI 300 NEVDILQEIL SVASASQQLI NNSGYPDIWA GSNYHLDEFS CLLDFEVDRK TEGMHFSPMD 360 GMGSSRSMTK SCEAEEPTKL IEICDLEEEF KNEKGAENLK GVKILNNELI EITMEGQRST 420 PVDSTPGHQV GETADAEGEA NPSTSSPDLR NIDNKPILSP SQPDDFALDF MDIQPLGLYQ 480 DDHDNSARAS TPTFEVYEKV EVKHGLFISS SGVAETFFHH VEPSKKISFH LNPMVMQDVV 540 ERFEFPTKDR GRFSFFSRFK AFIQEKLLGK ISMKAWGRSF IGDESVNGML QIAAVLLTSC 600 MYFGEVSQQA NRRKHYFSKG QMMNAKREGG YLDGLKKVKK VDEKNIWFPT VRGRRIGSMI 660 LNAKWSFLTA AFAFYASKLT H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010908787.1 | 0.0 | NAC domain-containing protein 86 isoform X2 | ||||
Swissprot | A4VCM0 | 2e-98 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A2H3X4N5 | 0.0 | A0A2H3X4N5_PHODC; NAC domain-containing protein 86-like | ||||
STRING | XP_008778272.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-133 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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