PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 884aa MW: 98164.1 Da PI: 6.8347 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.4e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_010908738.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99*****************************8544444..48************************************************..788 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010908738.1 218 NNQLLLGIRRA 228 8889****997 PP | |||||||
2 | Auxin_resp | 121.7 | 5.5e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_010908738.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-43 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-22 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-26 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-23 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.7E-35 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.77E-7 | 743 | 827 | No hit | No description |
PROSITE profile | PS51745 | 21.699 | 751 | 835 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MRPSSSGLAN QPQEEEQRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE 60 IDTHIPNYPS LQSQLICQLH DVTMHADAET DEVYAQMTLQ PLSLQEQKEP YHPTELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPTG LPSLHGGKDD DLDLSSPLRW LRDGGNPGIQ SLNFQGVGVT 420 PWLHPRIDAS MLGLQSDMYQ SMAAAALQEI RTADPTKQQV QPQSQQSFHH TVQDSQVPSQ 480 TRSQFLQHQL QHCNSFDEQK QHQQIPQQQQ LLQIQQQQQH QQMQQKKHLS DHQQIPNMVS 540 ALSQFSSASH SQSPLQKISL FSQPQNLADS NGNSVSTSSA FPLHNILQPF SPDDAPLSLP 600 RTTPLITSSP WPSKRVALES ILPSGAQFVV PHVEQLGATQ PNASPHSVTL APFPGRECSV 660 DQDGSMDSQN NLLFGVNIDS SSLLVQNGMS NLRNVVNETD SAAMPYAACK FLSSSGTDFP 720 LNQALTTSSC LDKSGFLHSV ENVDHMNHQS GTFVKVYKSG SYGRLLDIAR FSSYHELRSE 780 LGRLFGLEGR LEDPVRSGWQ LVFVDRENDA LLVGDDPWQE FVNNVDCIKI LSPQEVQQMG 840 KQGVGLLNSA PIKRLPSNSC DGYGSRQDSS NLSTGITSVG SLNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 20 | 357 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029117644.1 | 0.0 | auxin response factor 17 isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A2H3X3E6 | 0.0 | A0A2H3X3E6_PHODC; Auxin response factor | ||||
STRING | XP_008777704.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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