PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 320aa MW: 35360.5 Da PI: 10.1291 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 364.3 | 2.4e-111 | 3 | 320 | 16 | 301 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgt 105 p++++k++++++lm+++aerd++i+ernla+sekkaa+aerdma lqrd+a+ ern+a++ rdn+++al+ ++++ + + +++g++ t XP_010908704.1 3 PQHQMKDHQTMKLMAIMAERDSAIHERNLAISEKKAALAERDMAILQRDAAIMERNNAIMGRDNAIAALQCARENGVngnggNGCSPGCT--TLT 95 4579******************************************************************99888774554444444444..445 PP GAGA_bind 106 ksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186 k+ d+l +++ ql+d +++ r+++++ea pi++ ++++++++k+k+ ++++ ++ +kk k+++ksk++ + + ++ + XP_010908704.1 96 KHHDHLPHVHPspLQLSDAPYDhERQMHITEACPISSVVDSVSKRHKTKRMRKENGVQAMPTKKSSKSQKKSKRNGSDDLSK-Qvsiskfhgewk 189 55555555444779********99***************9999999998777777666666666666555555555544443.2468899***** PP GAGA_bind 187 ................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265 k+++k +dl+ln+vs+Dest+PvPvCsCtG+ + CYkWGnGGWqS+CCttt+SvyPLPv++++r+aR++grKmS+gaf XP_010908704.1 190 gqgqvgsggdlnkvsmPKHQWKGQDLGLNQVSFDESTMPVPVCSCTGKFHPCYKWGNGGWQSSCCTTTLSVYPLPVMPNKRHARVGGRKMSGGAF 284 ***************99****************************************************************************** PP GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+ XP_010908704.1 285 IKLLSRLAAEGHDLSMPVDLKDHWAKHGTNRYITIK 320 ***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 3.8E-96 | 1 | 320 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 6.4E-127 | 1 | 320 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MMPQHQMKDH QTMKLMAIMA ERDSAIHERN LAISEKKAAL AERDMAILQR DAAIMERNNA 60 IMGRDNAIAA LQCARENGVN GNGGNGCSPG CTTLTKHHDH LPHVHPSPLQ LSDAPYDHER 120 QMHITEACPI SSVVDSVSKR HKTKRMRKEN GVQAMPTKKS SKSQKKSKRN GSDDLSKQVS 180 ISKFHGEWKG QGQVGSGGDL NKVSMPKHQW KGQDLGLNQV SFDESTMPVP VCSCTGKFHP 240 CYKWGNGGWQ SSCCTTTLSV YPLPVMPNKR HARVGGRKMS GGAFIKLLSR LAAEGHDLSM 300 PVDLKDHWAK HGTNRYITIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010908697.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_010908698.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_010908703.1 | 0.0 | barley B recombinant-like protein D isoform X3 | ||||
Refseq | XP_029117627.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_029117628.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_029117629.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_029117632.1 | 0.0 | barley B recombinant-like protein D isoform X3 | ||||
Refseq | XP_029117633.1 | 0.0 | barley B recombinant-like protein D isoform X3 | ||||
Swissprot | Q5VSA8 | 1e-128 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A2H3X057 | 0.0 | A0A2H3X057_PHODC; barley B recombinant-like protein D isoform X2 | ||||
STRING | XP_008776328.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 3e-97 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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