PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_010908704.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

BBR-BPC

Protein Properties

Length: 320aa MW: 35360.5 Da PI: 10.1291

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908704.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	364.3	2.4e-111	3	320	16	301
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgt 105 p++++k++++++lm+++aerd++i+ernla+sekkaa+aerdma lqrd+a+ ern+a++ rdn+++al+ ++++ + + +++g++ t XP_010908704.1 3 PQHQMKDHQTMKLMAIMAERDSAIHERNLAISEKKAALAERDMAILQRDAAIMERNNAIMGRDNAIAALQCARENGVngnggNGCSPGCT--TLT 95 4579****************************************************************99888774554444444444..445 PP GAGA_bind 106 ksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186 k+ d+l +++ ql+d +++ r+++++ea pi++ ++++++++k+k+ ++++ ++ +kk k+++ksk++ + + ++ + XP_010908704.1 96 KHHDHLPHVHPspLQLSDAPYDhERQMHITEACPISSVVDSVSKRHKTKRMRKENGVQAMPTKKSSKSQKKSKRNGSDDLSK-Qvsiskfhgewk 189 55555555444779****99***********9999999998777777666666666666555555555544443.2468899* PP GAGA_bind 187 ................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265 k+++k +dl+ln+vs+Dest+PvPvCsCtG+ + CYkWGnGGWqS+CCttt+SvyPLPv++++r+aR++grKmS+gaf XP_010908704.1 190 gqgqvgsggdlnkvsmPKHQWKGQDLGLNQVSFDESTMPVPVCSCTGKFHPCYKWGNGGWQSSCCTTTLSVYPLPVMPNKRHARVGGRKMSGGAF 284 ***********99************************************************************************** PP GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+ XP_010908704.1 285 IKLLSRLAAEGHDLSMPVDLKDHWAKHGTNRYITIK 320 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.8E-96	1	320	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	6.4E-127	1	320	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MMPQHQMKDH QTMKLMAIMA ERDSAIHERN LAISEKKAAL AERDMAILQR DAAIMERNNA 60 IMGRDNAIAA LQCARENGVN GNGGNGCSPG CTTLTKHHDH LPHVHPSPLQ LSDAPYDHER 120 QMHITEACPI SSVVDSVSKR HKTKRMRKEN GVQAMPTKKS SKSQKKSKRN GSDDLSKQVS 180 ISKFHGEWKG QGQVGSGGDL NKVSMPKHQW KGQDLGLNQV SFDESTMPVP VCSCTGKFHP 240 CYKWGNGGWQ SSCCTTTLSV YPLPVMPNKR HARVGGRKMS GGAFIKLLSR LAAEGHDLSM 300 PVDLKDHWAK HGTNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908697.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_010908698.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_010908703.1	0.0	barley B recombinant-like protein D isoform X3
Refseq	XP_029117627.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029117628.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029117629.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029117632.1	0.0	barley B recombinant-like protein D isoform X3
Refseq	XP_029117633.1	0.0	barley B recombinant-like protein D isoform X3
Swissprot	Q5VSA8	1e-128	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2H3X057	0.0	A0A2H3X057_PHODC; barley B recombinant-like protein D isoform X2
STRING	XP_008776328.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	3e-97	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]