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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010908560.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 247aa MW: 27528.4 Da PI: 10.1738 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 39.2 | 1.3e-12 | 61 | 105 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h+++E+rRR+riN +++Lr+++P++ K++Ka+ L ++++++k+L
XP_010908560.1 61 HSQAEKRRRERINAHLSTLRRMIPNS-----NKMDKASLLGRVIDHVKDL 105
99***********************7.....5****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.51 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 6.94E-14 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 7.90E-12 | 61 | 108 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 8.6E-14 | 61 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.1E-10 | 61 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.7E-12 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 247 aa Download sequence Send to blast |
MATRYSANGW AEKGNRSTFP SPSKGSLLLP RPSNSAPAFL GQGSFYPSLC EDERALTLRI 60 HSQAEKRRRE RINAHLSTLR RMIPNSNKMD KASLLGRVID HVKDLKRKAV DASKVSTIPT 120 EANVVTVESH DGGYQNTFSL DDDNLYIKAS LCCDDRPDLF AELIEAFQRL RLRAIRADMT 180 SLGGRIQNVF LLCRKDSSGS ACLNSLKESI KEALDRVASV DMVPSNAFVS KRQKLLQPRF 240 PCSNRSL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010908560.1 | 0.0 | transcription factor bHLH51 | ||||
| TrEMBL | A0A2H3Y3J8 | 1e-80 | A0A2H3Y3J8_PHODC; transcription factor bHLH51-like | ||||
| STRING | XP_008805006.1 | 1e-152 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3347 | 36 | 78 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 2e-39 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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