PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908496.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 511aa MW: 55642.9 Da PI: 4.2945

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908496.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.6e-35	33	125	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d++++ ++sw +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_010908496.1 33 FLSKTYEMVDDPATDAIVSWGPANNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRKDLLKT 118 9******************999*************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k + XP_010908496.1 119 INRRKPS 125 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.7E-39	27	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.58E-35	28	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-62	29	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-20	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-31	33	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-20	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	72	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-20	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MGDNAGNEGG AADVPPAASG ANAGLGGNAP PPFLSKTYEM VDDPATDAIV SWGPANNSFV 60 VWNTPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GRKDLLKTIN 120 RRKPSHAHSQ TQQSQPQNSS VAACVEVGKF GLEEEIERLK RDKNVLMQEL VRLRQQQQAT 180 DHQLQTLGKR LQGMEQRQQQ MMSFLAKAMQ SPGFLAQLVE QNDNNRRIAG GNKKRRLPKQ 240 EGSLGGDSAS LDGQIIKYQP QMNEAAKAML RQILKIGSSQ PRLESFSNSD NILLESFPSS 300 GAFDSSSSSL NSGVTLAEVP PNSGVPYVPA SSGFSAIGSS SALSEIQSSG DVTDMVATNE 360 LPDMDVLSAV PDSIAPSDMH IPEFPELEGI MPDDGVDIPS ENFAMPDPES VYIDPLTAVV 420 DEAAVPIETE KLCVDNIIDI LAEDQKLPGI IDSFWEQFLS ASPLTGETEE AESSIQETKD 480 MQPGPEHGWD GAQNMENLTE QMGLLSSDPK Q

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MGDNAGNEGG AADVPPAASG ANAGLGGNAP PPFLSKTYEM VDDPATDAIV SWGPANNSFV  60
VWNTPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GRKDLLKTIN  120
RRKPSHAHSQ TQQSQPQNSS VAACVEVGKF GLEEEIERLK RDKNVLMQEL VRLRQQQQAT  180
DHQLQTLGKR LQGMEQRQQQ MMSFLAKAMQ SPGFLAQLVE QNDNNRRIAG GNKKRRLPKQ  240
EGSLGGDSAS LDGQIIKYQP QMNEAAKAML RQILKIGSSQ PRLESFSNSD NILLESFPSS  300
GAFDSSSSSL NSGVTLAEVP PNSGVPYVPA SSGFSAIGSS SALSEIQSSG DVTDMVATNE  360
LPDMDVLSAV PDSIAPSDMH IPEFPELEGI MPDDGVDIPS ENFAMPDPES VYIDPLTAVV  420
DEAAVPIETE KLCVDNIIDI LAEDQKLPGI IDSFWEQFLS ASPLTGETEE AESSIQETKD  480
MQPGPEHGWD GAQNMENLTE QMGLLSSDPK Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-27	10	122	10	129	Heat shock factor protein 1
5d5v_B	2e-27	10	122	10	129	Heat shock factor protein 1
5d5v_D	2e-27	10	122	10	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019702683.1	0.0	heat stress transcription factor A-1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3YL32	0.0	A0A2H3YL32_PHODC; heat stress transcription factor A-1
STRING	XP_008800101.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-122	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]