PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908151.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ZF-HD
Protein Properties Length: 264aa    MW: 29024.1 Da    PI: 8.4076
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908151.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.36.6e-3269125360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      v+Y+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e e e
  XP_010908151.1  69 VVMYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKEIEGE 125
                     689*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2370125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.7E-3070122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.7E-3172122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13772121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-29186259IPR009057Homeodomain-like
SuperFamilySSF466893.31E-18187258IPR009057Homeodomain-like
TIGRFAMsTIGR015654.4E-27197253IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MERMDLYGHG GVPSPITSKY AGAHGQNLSK DTPSFYSSSY GPPPLPPLST NPTEAQQPTT  60
HSTKKGGAVV MYRECLKNHA ASIGGNATDG CGEFMPSGEE GTLEALKCSA CSCHRNFHRK  120
EIEGECHHHH LKETKFVGYK GVLISGPEAF GYNHPANHCL IPSPLPHQMV MPLGALMASE  180
SDEMDGVGGA RAPPMGKKRV RTKFAPEQKE KMLSFAERIG WRLQRQEESV VEQFCQEIGV  240
NRKVLRVWMH NNKHNLAKKE LPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-241972551775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908151.10.0zinc-finger homeodomain protein 4
SwissprotO647222e-69ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A3Q0I3C01e-163A0A3Q0I3C0_PHODC; zinc-finger homeodomain protein 4-like
STRINGXP_008788352.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-71homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]