PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908088.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 302aa MW: 32671.9 Da PI: 6.5783

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908088.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110	1.2e-34	30	84	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl XP_010908088.1 30 KPRLRWTAELHDRFVDAVNQLGGPDKATPKTIMKTMGVKGLTLYHLKSHLQKYRL 84 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-33	27	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.91	27	87	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.2E-24	30	85	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.06E-18	30	86	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-9	32	83	IPR001005	SANT/Myb domain
Pfam	PF14379	4.6E-24	138	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MYPKGGEFNG SLDGASLLRD ASHLLTNDPK PRLRWTAELH DRFVDAVNQL GGPDKATPKT 60 IMKTMGVKGL TLYHLKSHLQ KYRLGKQSSK ESSENSKGGT SLSRSLLSAG VVENQGTGSS 120 SSSPSSRLMA QDLNDGCNEA MRVQMELQRQ LHEQLEVQRH LQIRIEAQGK YLHSMLERAC 180 NALINPNLAL VGLASIRCDL SELPNVETDD CLGHPHVSLK LPSLSEIAAA CMEEKSLNRA 240 IAQIAECSVD SCLTSTESPG RAPVLGSQAA ALRKGLCPLL GTDEAHAWDG DVHEDGQWVS 300 SI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908088.1	0.0	protein PHR1-LIKE 2 isoform X1
Swissprot	Q94A57	1e-83	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A3Q0HRP5	1e-149	A0A3Q0HRP5_PHODC; protein PHR1-LIKE 3-like
STRING	XP_008778612.1	1e-148	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29411	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-74	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]