PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010907804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 30114.6 Da PI: 8.7153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H XP_010907804.1 53 YSCSFCRREFRSAQALGGHMNVH 75 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.78E-6 | 50 | 79 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MWTRRKSGER TLFGSPLHQI STSSSYNDSW EEQAFAEDSA GHLGGCVWPP RSYSCSFCRR 60 EFRSAQALGG HMNVHRRDRA RLRQSSSPAR ESHDGDQQHH RSPCTPPGTL HLGRVGSPVC 120 NSNSNPSCDV MASILSPRLS AASTGGNSKS SMVSPAHSAT TIHENPMKSL FTAAARSFAD 180 PTNVRQLTLP ELELGRENLK LREVGFRMSR NPGDEEETIT SSKRRRTDPL FPFCKGPTPI 240 DQQKLHSEVL SPFPDEELDL ELRLGHRPKD K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 48 | 75 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 48 | 75 | 2 | 29 | Transcriptional regulator SUPERMAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010907804.2 | 0.0 | uncharacterized protein LOC105034368 | ||||
TrEMBL | A0A2H3X4C3 | 1e-164 | A0A2H3X4C3_PHODC; zinc finger protein 11-like | ||||
STRING | XP_008778130.1 | 1e-165 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 3e-28 | zinc-finger protein 10 |