PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 298aa MW: 33440.3 Da PI: 7.3454

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907625.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.8e-10	30	77	2	47
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT+eE +l+ da + + + +W+ +a++++ g++ +++ ++ ++ XP_010907625.1 30 GNWTQEENKLFEDALAHFDRDtpeRWEMVAAMIP-GKSVQDIITHYKDL 77 89***************99*********.*********875 PP
2	Myb_DNA-binding	45.6	1.6e-14	136	180	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky XP_010907625.1 136 PWTEEEHKFFLLGLQKYGKGDWRNISRNFVLTRTPTQVASHAQKY 180 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	8.944	27	87	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	3.8E-4	28	76	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-9	28	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.28E-12	30	86	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-8	30	77	IPR001005	SANT/Myb domain
CDD	cd00167	1.54E-7	31	77	No hit	No description
PROSITE profile	PS51294	19.229	129	185	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-17	131	185	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-17	132	183	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.9E-12	133	179	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-12	133	183	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-12	136	180	IPR001005	SANT/Myb domain
CDD	cd00167	7.91E-11	136	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVTNSWMEVL PPTTPYFPNS SWLLGPKRSG NWTQEENKLF EDALAHFDRD TPERWEMVAA 60 MIPGKSVQDI ITHYKDLEDD VSKIESGRIP FPGYSSSSFT LDWENSHGYE GSKPSYCVGA 120 KRSGGRLDQE RKKGVPWTEE EHKFFLLGLQ KYGKGDWRNI SRNFVLTRTP TQVASHAQKY 180 FIRLSSGGKD RRRSSIHDIT TANLPSNGPP SPSQSSVLSM RSSSAVNTAI SDQFSVIVDS 240 NQPNEAASVF SPSAHGNQFM QPPYEVTSYG MKLPAQRGNL QDSMINDQNM LFQMHAHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-15	32	97	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907625.1	0.0	transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-98	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2H3XL35	0.0	A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRING	XP_008785419.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-86	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]