PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010907500.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 328aa MW: 34889.4 Da PI: 7.1048

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907500.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.3	1.9e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ XP_010907500.1 4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 6******************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_010907500.1 99 AVEAVLKGA 107 *998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.927	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPII QIPSETAAST 120 PVPPLKAYDI HHVSKEPGAD AAEAASTPVP PLKPYDIRHI SKDPDAVVAA AAELHRISKS 180 RPRFKRTASA KRKPGTVPVE AAEPDSARGC NPSWPRCDPV DFQRAQSHES AASQALEPAT 240 AAAVGGVEGD SQESGSVFSG ETGEASHVSQ GEPNSAEESE VGLELTLGFE PVSRAGRTAR 300 PAAESRCDVR SWEGDTRRMG LGLELLAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907500.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	4e-82	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2H3YTG8	0.0	A0A2H3YTG8_PHODC; LOB domain-containing protein 41-like
STRING	XP_008803551.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-84	LOB domain-containing protein 41