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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010907313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1105aa MW: 118242 Da PI: 8.0191 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.5 | 5.2e-07 | 297 | 315 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C + CH+G C pC+ XP_010907313.1 297 CGRHRCDRVCHTGACSPCR 315 ******************6 PP | |||||||
2 | zf-NF-X1 | 22.7 | 2.2e-07 | 419 | 436 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+++CHeG+CppC XP_010907313.1 419 CGLHRCKETCHEGECPPC 436 ****************** PP | |||||||
3 | zf-NF-X1 | 16.3 | 2.1e-05 | 516 | 534 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+Cq lCH G CppC XP_010907313.1 516 CGQHSCQMLCHSGHCPPCL 534 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 2.47E-6 | 123 | 191 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 124 | 185 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 8.653 | 124 | 186 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 3.10E-6 | 219 | 280 | No hit | No description |
SMART | SM00438 | 0.023 | 242 | 260 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.3 | 244 | 259 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.75E-12 | 287 | 335 | No hit | No description |
SMART | SM00438 | 0.0015 | 297 | 316 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.3E-5 | 297 | 315 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.15E-8 | 351 | 394 | No hit | No description |
SMART | SM00438 | 0.0074 | 361 | 380 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.074 | 361 | 378 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.39E-12 | 409 | 457 | No hit | No description |
SMART | SM00438 | 4.1E-5 | 419 | 438 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.6E-6 | 419 | 436 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 230 | 477 | 496 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 477 | 488 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.06E-9 | 506 | 558 | No hit | No description |
SMART | SM00438 | 7.6E-4 | 516 | 535 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.0E-4 | 516 | 533 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.98E-5 | 563 | 611 | No hit | No description |
SMART | SM00438 | 0.0045 | 573 | 591 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.5 | 573 | 590 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.26 | 626 | 658 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.032 | 626 | 641 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 17 | 660 | 686 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.19 | 667 | 688 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.8E-4 | 799 | 864 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1105 aa Download sequence Send to blast |
MMRPASSESS RPRDDRRIGN GGGLRHHHRI APSAASGNRP EWVPRGSAAA TSIHQPPPPS 60 GEPINAPGSN LGHHRHRNNQ PARPAYVPRG AAPPARLTAG ADPASVPQLV QEIQDKLARG 120 VMECMICYDM VRRSASVWSC SSCFSIFHLP CIRKWARSPT SADTVAPAAT ADGGGGGGRW 180 RCPGCQSVQA TPAQELNYTC FCGRRRDPPI DFYLTPHSCG EPCGKPLDKT PPSSTGDDDS 240 RCPHVCVLQC HPGPCPPCKA FAPRRPCPCG KKTIVRRCSD RRSPLTCGQQ CNRLLSCGRH 300 RCDRVCHTGA CSPCRVLISA SCFCKKKTEI VICGSMAVKG DVKEIDGVFS CNSICGRTLA 360 CGSHFCSENC HPGTCGECEL LPEKIKTCHC GKTELKEERE SCLDPIPTCS KLCAKLLICG 420 LHRCKETCHE GECPPCLVRV EQKCRCGSSS QTVECYKVSE ERETFVCDKP CGRKKNCGRH 480 RCSERCCPLS KPGAQLSSVD WDPHLCSMPC GKRLRCGQHS CQMLCHSGHC PPCLETIFTD 540 LTCACGKTSI PPPLPCGTPT PSCPHPCLVP QPCGHSASHT CHFGNCPPCS VPVAKECIGG 600 HVLLRNIPCG SKDIRCNQLC GKTRQCGLHA CARTCHPPPC DTSGSSVSVS GAKASCGQVC 660 GAPRRDCKHT CTAPCHPSAP CPDIRCDFPV TITCSCGRMT ASVPCGAGDG ISGFHGDTAF 720 EASIVQKLPV PLQSVEANGK KVPLGQRKLT CDEECAKQER KRDLAEAFDI TPPNLDALHF 780 GESAAASDLL ADLYRREPKW VLAVEERLKF LVLGRAKGGG AGSLRVHVFG HMLKEKRDAV 840 GHIAERWKLS VQAAGWEPKR FLVVHVTPKS RPPARILGSK PGIPVTAPHP PAFDPLIDMD 900 PRLVVAMLDL PRDADTSALV LRFGGECELV WLNDENALAV FGDPARAATA LRRLDHGSAY 960 QGAVMVLQNA GTSGPWASNA WAVGSREGGV TAKSNGPWKK AVASKSDSWG GEWSGWLTAG 1020 VSVPVWRGNE AAPVPASTNR WNVLDSDMGA NLVASESVED HGSVGVEDGM VMEPRTSGLG 1080 LAGQGAEVGK VEMPEEVDDW EAAYE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029117298.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2H3XV92 | 0.0 | A0A2H3XV92_PHODC; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | XP_008789280.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |