PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010907103.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 484aa MW: 53172.8 Da PI: 7.2143

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907103.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	169	210	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L XP_010907103.1 169 AKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLTQLEQDL 210 5889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-7	166	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	168	212	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.7E-8	169	211	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.13E-7	170	213	No hit	No description
CDD	cd14708	1.90E-22	170	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-8	171	214	No hit	No description
PROSITE pattern	PS00036	0	173	188	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.3E-30	251	322	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MENHRVGETG LSESGPSSQP VAYGVHGITP AATNFFDQEG TAYFGELEEA LMQGVAGIRS 60 DGDRKPFFTP PTLEIFPSWP MRFQQTPKGN SQPAKSSDSG SAQNTISQLD LESPVSIKAS 120 SGLRGQQQGM MASDAPRAGA AAPNHQPKTQ DNRRVAGSTA EKDGKILDAK TLRRLAQNRE 180 AARKSRLRKK AYIQQLESSR IKLTQLEQDL QRARSQGLFL GAAGAGGNIS SAAAVFDMEY 240 SRWLDENCKR MTELREGLQA HLSDGDLRVA VDECLTHYDE IFRLKGVAAK SDVFHLITGT 300 WTTPAERFFL WMGGFRPSEL LKSSFEQILI PQMDPLTEQQ LVGICNLQQS SQQAEEALSQ 360 GLEQLHQSLA DTVASGALSE DTNVGNYMSH IAIALGKLAN LEGFVRQADN LRQQTLHQMR 420 RILTVRQAAR CFLAIGEYHS RLRALSSLWA SHPRGSLITN ESACPTTTDL QIIHQPVHSH 480 FSAF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MENHRVGETG LSESGPSSQP VAYGVHGITP AATNFFDQEG TAYFGELEEA LMQGVAGIRS  60
DGDRKPFFTP PTLEIFPSWP MRFQQTPKGN SQPAKSSDSG SAQNTISQLD LESPVSIKAS  120
SGLRGQQQGM MASDAPRAGA AAPNHQPKTQ DNRRVAGSTA EKDGKILDAK TLRRLAQNRE  180
AARKSRLRKK AYIQQLESSR IKLTQLEQDL QRARSQGLFL GAAGAGGNIS SAAAVFDMEY  240
SRWLDENCKR MTELREGLQA HLSDGDLRVA VDECLTHYDE IFRLKGVAAK SDVFHLITGT  300
WTTPAERFFL WMGGFRPSEL LKSSFEQILI PQMDPLTEQQ LVGICNLQQS SQQAEEALSQ  360
GLEQLHQSLA DTVASGALSE DTNVGNYMSH IAIALGKLAN LEGFVRQADN LRQQTLHQMR  420
RILTVRQAAR CFLAIGEYHS RLRALSSLWA SHPRGSLITN ESACPTTTDL QIIHQPVHSH  480
FSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907104.1	0.0	transcription factor TGA2.2
Refseq	XP_019702357.1	0.0	transcription factor TGA2.2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A3Q0I386	0.0	A0A3Q0I386_PHODC; transcription factor TGAL5-like isoform X3
TrEMBL	A0A3Q0I3P0	0.0	A0A3Q0I3P0_PHODC; transcription factor TGAL5-like isoform X2
STRING	XP_008787868.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-139	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]