PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906884.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 689aa    MW: 77318.3 Da    PI: 4.9669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906884.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14475521455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_010906884.1 475 NHVLAERRRREKLNEKFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 521
                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-559186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.485471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19473544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-14475525No hitNo description
Gene3DG3DSA:4.10.280.108.1E-19475537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11475520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-18477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.2E-4618665No hitNo description
PROSITE profilePS516719.117619689IPR002912ACT domain
CDDcd021160.00196620677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MVAPQSTKLQ QTLQEVVQSV QWTYSLFWQL CPQQGILVWG EGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYESLS AGEANQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAFAKRR HVWLTRANEA DSKIFSRAIL AKTVVCIPLM DGVLELGTTE KVEEDIGLIQ  180
HAKSFFMDHQ DIHPKPALSE YSTSNPTACT EQQLLQTQAI QQMSVDPHGS NQEEEEDDDD  240
DADDDEDIDH NDVDDDGDEV EVGSGSEAET GRYNAGISTQ LIPPSLAADE KAIPATEPSE  300
LMQLEMSEGI RLGSPDECSN DLDTELQVLA VCHNSEQSNQ QRRDDSYQAW NFLHDDPCDG  360
FPLSSATQIQ ELSPEDAHYS ETVSTILQNN LSRWVESNSV GYLPHSQQSS FSKWNSRRDH  420
HLNVISEGTS QWLLKNILFN IPNLHCKYKD ENSPKSRDGE GGIRKGMPQE ELSANHVLAE  480
RRRREKLNEK FIILRSLVPF VTKMDKASIL GDTIEYVKQL RRHIQDLESR NSLMESEQWL  540
KATQIHKPGN LEGQSVKKSS SSPQSNTVNH IFSSQNRVAS SDKRKIRVLE GGKGTGKHSK  600
AVEAPSTNVQ VSIIESDALL ELQCPYRDGL LLKIMQTLHE LRLEITSIRS SSANGTFIAE  660
MRAVVKEIRG KRAGIVEVKK AIHRIFSQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-2191869192Transcription factor MYC3
4rqw_B3e-2191869192Transcription factor MYC3
4rs9_A3e-2191869192Transcription factor MYC3
4yz6_A3e-2191869192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479484ERRRRE
2480485RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906884.10.0basic helix-loop-helix protein A isoform X3
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2H3XZ810.0A0A2H3XZ81_PHODC; basic helix-loop-helix protein A isoform X2
STRINGXP_008790987.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-96bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]