PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010906882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 694aa MW: 77874 Da PI: 5.0119 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.7e-14 | 480 | 526 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_010906882.1 480 NHVLAERRRREKLNEKFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 526 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.7E-59 | 9 | 191 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.485 | 476 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-19 | 478 | 549 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-11 | 480 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-19 | 480 | 542 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.23E-14 | 480 | 530 | No hit | No description |
SMART | SM00353 | 8.4E-18 | 482 | 531 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 8.3E-4 | 623 | 670 | No hit | No description |
PROSITE profile | PS51671 | 9.117 | 624 | 694 | IPR002912 | ACT domain |
CDD | cd02116 | 0.00198 | 625 | 682 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MVAPQSTKLQ QTLQEVVQSV QWTYSLFWQL CPQQGILVWG EGYYNGAIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYESLS AGEANQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAFAKRR HVWLTRANEA DSKIFSRAIL AKSARIQTVV CIPLMDGVLE LGTTEKVEED 180 IGLIQHAKSF FMDHQDIHPK PALSEYSTSN PTACTEQQLL QTQAIQQMSV DPHGSNQEEE 240 EDDDDDADDD EDIDHNDVDD DGDEVEVGSG SEAETGRYNA GISTQLIPPS LAADEKAIPA 300 TEPSELMQLE MSEGIRLGSP DECSNDLDTE LQVLAVCHNS EQSNQQRRDD SYQAWNFLHD 360 DPCDGFPLSS ATQIQELSPE DAHYSETVST ILQNNLSRWV ESNSVGYLPH SQQSSFSKWN 420 SRRDHHLNVI SEGTSQWLLK NILFNIPNLH CKYKDENSPK SRDGEGGIRK GMPQEELSAN 480 HVLAERRRRE KLNEKFIILR SLVPFVTKMD KASILGDTIE YVKQLRRHIQ DLESRNSLME 540 SEQWLKATQI HKPGNLEGQS VKKSSSSPQS NTVNHIFSSQ NRVASSDKRK IRVLEGGKGT 600 GKHSKAVEAP STNVQVSIIE SDALLELQCP YRDGLLLKIM QTLHELRLEI TSIRSSSANG 660 TFIAEMRAVV KEIRGKRAGI VEVKKAIHRI FSQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-22 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-22 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-22 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-22 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 484 | 489 | ERRRRE |
2 | 485 | 490 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010906882.1 | 0.0 | basic helix-loop-helix protein A isoform X2 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A2H3XZ81 | 0.0 | A0A2H3XZ81_PHODC; basic helix-loop-helix protein A isoform X2 | ||||
STRING | XP_008790987.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-101 | bHLH family protein |
Publications ? help Back to Top | |||
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