PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906882.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 694aa MW: 77874 Da PI: 5.0119

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906882.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.7e-14	480	526	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_010906882.1 480 NHVLAERRRREKLNEKFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 526 7999********************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-59	9	191	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.485	476	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-19	478	549	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-11	480	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-19	480	542	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-14	480	530	No hit	No description
SMART	SM00353	8.4E-18	482	531	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	8.3E-4	623	670	No hit	No description
PROSITE profile	PS51671	9.117	624	694	IPR002912	ACT domain
CDD	cd02116	0.00198	625	682	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0010214	Biological Process	seed coat development
GO:2000029	Biological Process	regulation of proanthocyanidin biosynthetic process
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MVAPQSTKLQ QTLQEVVQSV QWTYSLFWQL CPQQGILVWG EGYYNGAIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYESLS AGEANQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAFAKRR HVWLTRANEA DSKIFSRAIL AKSARIQTVV CIPLMDGVLE LGTTEKVEED 180 IGLIQHAKSF FMDHQDIHPK PALSEYSTSN PTACTEQQLL QTQAIQQMSV DPHGSNQEEE 240 EDDDDDADDD EDIDHNDVDD DGDEVEVGSG SEAETGRYNA GISTQLIPPS LAADEKAIPA 300 TEPSELMQLE MSEGIRLGSP DECSNDLDTE LQVLAVCHNS EQSNQQRRDD SYQAWNFLHD 360 DPCDGFPLSS ATQIQELSPE DAHYSETVST ILQNNLSRWV ESNSVGYLPH SQQSSFSKWN 420 SRRDHHLNVI SEGTSQWLLK NILFNIPNLH CKYKDENSPK SRDGEGGIRK GMPQEELSAN 480 HVLAERRRRE KLNEKFIILR SLVPFVTKMD KASILGDTIE YVKQLRRHIQ DLESRNSLME 540 SEQWLKATQI HKPGNLEGQS VKKSSSSPQS NTVNHIFSSQ NRVASSDKRK IRVLEGGKGT 600 GKHSKAVEAP STNVQVSIIE SDALLELQCP YRDGLLLKIM QTLHELRLEI TSIRSSSANG 660 TFIAEMRAVV KEIRGKRAGI VEVKKAIHRI FSQY

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MVAPQSTKLQ QTLQEVVQSV QWTYSLFWQL CPQQGILVWG EGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYESLS AGEANQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAFAKRR HVWLTRANEA DSKIFSRAIL AKSARIQTVV CIPLMDGVLE LGTTEKVEED  180
IGLIQHAKSF FMDHQDIHPK PALSEYSTSN PTACTEQQLL QTQAIQQMSV DPHGSNQEEE  240
EDDDDDADDD EDIDHNDVDD DGDEVEVGSG SEAETGRYNA GISTQLIPPS LAADEKAIPA  300
TEPSELMQLE MSEGIRLGSP DECSNDLDTE LQVLAVCHNS EQSNQQRRDD SYQAWNFLHD  360
DPCDGFPLSS ATQIQELSPE DAHYSETVST ILQNNLSRWV ESNSVGYLPH SQQSSFSKWN  420
SRRDHHLNVI SEGTSQWLLK NILFNIPNLH CKYKDENSPK SRDGEGGIRK GMPQEELSAN  480
HVLAERRRRE KLNEKFIILR SLVPFVTKMD KASILGDTIE YVKQLRRHIQ DLESRNSLME  540
SEQWLKATQI HKPGNLEGQS VKKSSSSPQS NTVNHIFSSQ NRVASSDKRK IRVLEGGKGT  600
GKHSKAVEAP STNVQVSIIE SDALLELQCP YRDGLLLKIM QTLHELRLEI TSIRSSSANG  660
TFIAEMRAVV KEIRGKRAGI VEVKKAIHRI FSQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-22	9	191	9	192	Transcription factor MYC3
4rqw_B	1e-22	9	191	9	192	Transcription factor MYC3
4rs9_A	1e-22	9	191	9	192	Transcription factor MYC3
4yz6_A	1e-22	9	191	9	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	484	489	ERRRRE
2	485	490	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906882.1	0.0	basic helix-loop-helix protein A isoform X2
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A2H3XZ81	0.0	A0A2H3XZ81_PHODC; basic helix-loop-helix protein A isoform X2
STRING	XP_008790987.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-101	bHLH family protein

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001]