PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906815.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 541aa    MW: 59009.7 Da    PI: 7.0266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906815.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.63.9e-17348394455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  XP_010906815.1 348 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 394
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-21342408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-21342401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-17347398No hitNo description
PfamPF000101.5E-14348394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-19350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MNQYVPAWNL EDDSTSFSGL PATNQKKPIE PDNELLELLW QDGHVIMHSQ THRKSPATFG  60
EVKQAQRAEP ALKCGGALGN SSDLIQEDET ASWFQYPLDD SLEKELCSEF FNEMPNVDAS  120
GTNKMSKDTT AQGERPIKFG ANDETSVFSG SDPKQSNIRF QENTMPPPKS HVIAPTQQAP  180
RLGNSNFVNF SHFSRPVKAD LGSLNGRRGK GSGKGIQVGA GESSMMTIGS RISGSNQTQA  240
LADPSHTISG DAAVVVSRGS KKDAQMTSLS ERVRTHTYET TVTSSSGGSG CSFGRTGQQI  300
TSNQSHKRKG RDAEESECQS EEAEYESVEA NKPAQQSTST RRSRAAEVHN LSERRRRDRI  360
NEKMKALQEL IPHCNKTDKA SMLDEAIEYL KSLQLQVQIM WMGSGMAPMM FPGVQQYMSR  420
MGMGVGHASM PSIHGPVQLP QVPFVNQSIA SASTANQRPL CPSPALNAVN LPNQMQNVHP  480
PETYARYLGL HPMQSPTQAM NFCTFGSQMV QQNQTAAAPS SSIIPTALKV PFENNQNNNS  540
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117053.10.0transcription factor PIF4 isoform X1
RefseqXP_029117054.10.0transcription factor PIF4 isoform X1
TrEMBLA0A2H3X0R70.0A0A2H3X0R7_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X5
STRINGXP_008776592.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.16e-41phytochrome interacting factor 3-like 6