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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010906805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 549aa MW: 59927.8 Da PI: 6.916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.6 | 4e-17 | 348 | 394 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_010906805.1 348 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 394 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.98E-21 | 342 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-21 | 342 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.559 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.32E-17 | 347 | 398 | No hit | No description |
Pfam | PF00010 | 1.6E-14 | 348 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-19 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MNQYVPAWNL EDDSTSFSGL PATNQKKPIE PDNELLELLW QDGHVIMHSQ THRKSPATFG 60 EVKQAQRAEP ALKCGGALGN SSDLIQEDET ASWFQYPLDD SLEKELCSEF FNEMPNVDAS 120 GTNKMSKDTT AQGERPIKFG ANDETSVFSG SDPKQSNIRF QENTMPPPKS HVIAPTQQAP 180 RLGNSNFVNF SHFSRPVKAD LGSLNGRRGK GSGKGIQVGA GESSMMTIGS RISGSNQTQA 240 LADPSHTISG DAAVVVSRGS KKDAQMTSLS ERVRTHTYET TVTSSSGGSG CSFGRTGQQI 300 TSNQSHKRKG RDAEESECQS EEAEYESVEA NKPAQQSTST RRSRAAEVHN LSERRRRDRI 360 NEKMKALQEL IPHCNKTDKA SMLDEAIEYL KSLQLQVQIM WMGSGMAPMM FPGVQQYMSR 420 MGMGVGHASM PSIHGPVQLP QVPFVNQSIA SASTANQRPL CPSPALNAVN LPNQMQNVHP 480 PETYARYLGL HPMQSPTQAM NFCTFGSQMV QQNQTAAAPS SSIIPTALKV PFENNQNNNS 540 ECQVHIAPP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 352 | 357 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029117053.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_029117054.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
TrEMBL | A0A2H3X0R6 | 0.0 | A0A2H3X0R6_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2 | ||||
STRING | XP_008776592.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3107 | 36 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.1 | 7e-41 | phytochrome interacting factor 3-like 6 |