PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010906740.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 1062aa MW: 118655 Da PI: 7.8541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906740.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.8e-09	221	241	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa+ G C++G++CkF H XP_010906740.1 221 PPCRDFAA-GRCRRGSQCKFLH 241 79****.*********** PP
2	zf-CCCH	17.5	7.1e-06	313	336	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 te+C +f + G C++G++C++ H XP_010906740.1 313 STERCYDFTK-GRCHRGSSCRYVHH 336 59******.***********7 PP
3	zf-CCCH	25.4	2.5e-08	377	396	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++fa+ G C++G+ CkF+H XP_010906740.1 377 PCKYFAE-GRCRRGEDCKFSH 396 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	8.8E-6	217	243	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.403	217	244	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-6	221	241	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.7E-5	222	243	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.3E-4	310	337	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.934	311	338	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.027	311	337	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.591	372	399	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-5	372	398	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	375	397	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-6	377	396	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-5	377	397	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence Send to blast
MAENVRKRIS KWDVVPEPHA PFISRQDSSL PLIADDPRKE KARSDWNSSN VDGEQFSRLA 60 ETKAEDFVHK DNSEAEKKFT RWSEQANDKT KLSEDFSERP PFPKQYDLEL HHKDGSSKSH 120 WEPQHENQTT VKVANMNKET DGWDLTQDHG YSSSMSPGLD SWRQRSCSGS PRAGWWRSRR 180 CSELCRSRSR SRSRSRSPYG LNRGPERWAD RGRIGAGKLA PPCRDFAAGR CRRGSQCKFL 240 HEDGGRRHSG RNYETDLREN RYEKQRYSGQ DKENYADSWE QSDYARNKLS PRHGSQYDEG 300 DCVKLELHKS NKSTERCYDF TKGRCHRGSS CRYVHHEVSS HGGWSTRDEA REKTYDRRDL 360 NASLGGRIES RRVSDTPCKY FAEGRCRRGE DCKFSHQDVP HEHLEGRPGD NSMIYNLGIG 420 DGSSRISSNW SDQTTAINVT NSSQWISNDG AGIAVPQSVD RVDSGQKPQY SQSQNPEGGN 480 CQIVAQEASQ KASTSQEEKI TEENSGQHQI PTVSAQQTAD RAYSIKDEMF SCEKNGTTVA 540 SNARPQAEMN SASNLSTVVS IAGQSFSQDG QSQYMGPQPF HAQSFTPNAQ FQQIVPPLPF 600 SGQLQQLYPM TSNGQSQFRV HSALLNTQNF NLSMHNQPVH LGQNKQNYNP GGQTQQNLNL 660 PPPQTGQSQQ NFQVLQSLPP PQSGPSQQNF NLSGQIQYTV PPFSGQNQQN NSLNGQNHQS 720 LPPPQNGPSN QNVHLLAPDG QSQYATPQPA NALSFNSEEK SLQTSSENTG REGINQNTDE 780 SEKKSLPLCS DTPVAHKVVT SEQAARITDL SASLAQFFHN SGLPPSQLFP PSSVRPPANP 840 AAPFLQPSEG SWTQSHVPTS DIMQPIKSET GNLPSGFSSN STEQKDPKMV ETQTHLESMI 900 PVSVTDGTDG NPSKGVNLKE KQQHGNHNPM QVELSVDTAS KKVNEIETGQ IKKEQAAHLE 960 DLDADMRTDG ESKRSKEIKG IRLFKCSLVE YVKDILKPTW KEGHLSKEAH KTIVKKVVDK 1020 VTGAMQGPNI PQTQEKIDLY LLHSKTKLNR LVQAYVEKYV KS

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence Send to blast

MAENVRKRIS KWDVVPEPHA PFISRQDSSL PLIADDPRKE KARSDWNSSN VDGEQFSRLA  60
ETKAEDFVHK DNSEAEKKFT RWSEQANDKT KLSEDFSERP PFPKQYDLEL HHKDGSSKSH  120
WEPQHENQTT VKVANMNKET DGWDLTQDHG YSSSMSPGLD SWRQRSCSGS PRAGWWRSRR  180
CSELCRSRSR SRSRSRSPYG LNRGPERWAD RGRIGAGKLA PPCRDFAAGR CRRGSQCKFL  240
HEDGGRRHSG RNYETDLREN RYEKQRYSGQ DKENYADSWE QSDYARNKLS PRHGSQYDEG  300
DCVKLELHKS NKSTERCYDF TKGRCHRGSS CRYVHHEVSS HGGWSTRDEA REKTYDRRDL  360
NASLGGRIES RRVSDTPCKY FAEGRCRRGE DCKFSHQDVP HEHLEGRPGD NSMIYNLGIG  420
DGSSRISSNW SDQTTAINVT NSSQWISNDG AGIAVPQSVD RVDSGQKPQY SQSQNPEGGN  480
CQIVAQEASQ KASTSQEEKI TEENSGQHQI PTVSAQQTAD RAYSIKDEMF SCEKNGTTVA  540
SNARPQAEMN SASNLSTVVS IAGQSFSQDG QSQYMGPQPF HAQSFTPNAQ FQQIVPPLPF  600
SGQLQQLYPM TSNGQSQFRV HSALLNTQNF NLSMHNQPVH LGQNKQNYNP GGQTQQNLNL  660
PPPQTGQSQQ NFQVLQSLPP PQSGPSQQNF NLSGQIQYTV PPFSGQNQQN NSLNGQNHQS  720
LPPPQNGPSN QNVHLLAPDG QSQYATPQPA NALSFNSEEK SLQTSSENTG REGINQNTDE  780
SEKKSLPLCS DTPVAHKVVT SEQAARITDL SASLAQFFHN SGLPPSQLFP PSSVRPPANP  840
AAPFLQPSEG SWTQSHVPTS DIMQPIKSET GNLPSGFSSN STEQKDPKMV ETQTHLESMI  900
PVSVTDGTDG NPSKGVNLKE KQQHGNHNPM QVELSVDTAS KKVNEIETGQ IKKEQAAHLE  960
DLDADMRTDG ESKRSKEIKG IRLFKCSLVE YVKDILKPTW KEGHLSKEAH KTIVKKVVDK  1020
VTGAMQGPNI PQTQEKIDLY LLHSKTKLNR LVQAYVEKYV KS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	195	RSRSRSRSRSR
2	187	195	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906738.1	0.0	zinc finger CCCH domain-containing protein 55 isoform X1
Refseq	XP_010906739.1	0.0	zinc finger CCCH domain-containing protein 55 isoform X1
Refseq	XP_019702250.1	0.0	zinc finger CCCH domain-containing protein 55 isoform X1
Refseq	XP_029117196.1	0.0	zinc finger CCCH domain-containing protein 55 isoform X1
TrEMBL	A0A3Q0IFH4	0.0	A0A3Q0IFH4_PHODC; zinc finger CCCH domain-containing protein 55-like isoform X1
STRING	XP_008809119.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-15	C3H family protein