PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906307.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 400aa    MW: 42902.1 Da    PI: 5.3624
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906307.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18311345135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg  kTp+WR gp g ktLCnaCG+++++ +l
  XP_010906307.1 311 CSHCGIQKTPQWRAGPLGAKTLCNACGVRFKSGRL 345
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.24305341IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-15305359IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-14307368No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14309343IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.32E-13310352No hitNo description
PfamPF003208.0E-16311345IPR000679Zinc finger, GATA-type
PROSITE patternPS003440311336IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLHPSLLSVF PFPPPTCSSL SFPPPSSLPY PPPLPLLPCS YSSSQKEEET EMKRLGGALK  60
NRFRLEVLRS DAEQQGFVGA GEVGWAVEPS ALFGEDFSVD ELLDFGGIME MEEKEAEEED  120
EEEQVERAEA EPFQISNSTS AVSRDLLAPA EIEFPNDDVE ELEWVSHFFD DSFMELSPCS  180
EITAPSSKRP SPSADSMESL APVKAKRSKR SRAAAGGVWS TAGPLALPDT SSSTSSNSCL  240
SSPSSSSSSS SSCLIYDSAV PGFATTDLVL LAGTPPSAKK DSQKKRGRKP KRPKLQSAAA  300
GGGGGGGDRR CSHCGIQKTP QWRAGPLGAK TLCNACGVRF KSGRLLPEYR PACSPTFLSH  360
VHSNSHRKVL EMRRQKEEKQ QKLLSTSTAA AAEAVPVSSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906307.10.0GATA transcription factor 6
TrEMBLA0A2H3WZL81e-161A0A2H3WZL8_PHODC; GATA transcription factor
STRINGXP_008776087.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5