PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 155aa MW: 17514.2 Da PI: 10.5937 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H XP_010905714.1 44 FECKTCSRRFPSFQALGGHRTSH 66 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 16.4 | 2.6e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg++Fs L H+r+H XP_010905714.1 89 HECSICGQRFSMGQALGGHMRRH 111 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.89E-5 | 41 | 70 | No hit | No description |
PROSITE profile | PS50157 | 9.91 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-12 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.32 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.94E-6 | 87 | 113 | No hit | No description |
Pfam | PF13912 | 1.2E-11 | 88 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 89 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.042 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MKRLRAEEQG EMETIKTANL LLSLSREGTP EKMHRRTKPE DGMFECKTCS RRFPSFQALG 60 GHRTSHKRPR LQGLGLDPLH GSRLKPTAHE CSICGQRFSM GQALGGHMRR HRPSGEAFPE 120 KKAGVAKSML DFNLIPLEND RSTETFRGVL LELFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788150.1 | 7e-70 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2H3XSQ1 | 2e-68 | A0A2H3XSQ1_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008776407.1 | 2e-88 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 9e-32 | C2H2 family protein |