PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905632.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 328aa    MW: 35921.6 Da    PI: 9.2362
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905632.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-32198253156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_010905632.1 198 KARRCWSPELHRRFVAALQKLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 253
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.245195255IPR017930Myb domain
SuperFamilySSF466899.32E-18196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-29197256IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-27198253IPR006447Myb domain, plants
PfamPF002492.3E-7200251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
FWKFSSLVAV IQGLKEELEQ CRGDRCARSC HVLEEFMPVK SKFEEEGTVK LEDDTKDKMN  60
WMSSAQLWSD NYSDENKNIN TNNEKRIAEK RGGEPDRETS SLESRGRSRG GALVPFKGPS  120
ALAVNPMKED KPAVALPDLS LLSPGIKASR PVPAVIEDHR GGCLISKVAV RSPAPAPAPV  180
SAVGAHLSLQ AQQQPPRKAR RCWSPELHRR FVAALQKLGG AQVATPKQIR ELMKVDGLTN  240
DEVKSHLQKY RLHTRRVPNA SAAANSPVVM MGSLWVPQEH YSTSKQSASQ SGSPQSPLQL  300
AGSARTISIT AGDSCEEEDG KSESYSWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-14198251154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-14198251154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-14198251154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-14198251154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905632.20.0transcription factor NIGTH1
TrEMBLA0A2H3Y2T90.0A0A2H3Y2T9_PHODC; myb family transcription factor EFM
STRINGXP_008792589.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.19e-35G2-like family protein