PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YA | ||||||||
Protein Properties | Length: 196aa MW: 21521.8 Da PI: 9.5279 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106 | 3.2e-33 | 64 | 120 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF XP_010905423.1 64 EEPVFVNAKQYHGILRRRQSRAKAESENKL-IKTRKPYLHESRHLHALKRARGCGGRF 120 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.1E-37 | 62 | 123 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.047 | 63 | 123 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.8E-27 | 65 | 120 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.0E-23 | 66 | 88 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 68 | 88 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.0E-23 | 97 | 120 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MATPVGYMMP PGHLETGHAV AQIAYPYVDP YYGGGFAGFG QTVFHPQMMG MQHPGVPLPT 60 EAVEEPVFVN AKQYHGILRR RQSRAKAESE NKLIKTRKPY LHESRHLHAL KRARGCGGRF 120 LNSKSEGNQQ NSISNSEGNQ QNSNPSSEGN QQNSNSKFEE NQKNGPKAAV SDDKEKPVSL 180 TNSDKSSLDN KPEATS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 63 | 126 | 1 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905422.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_010905424.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Refseq | XP_010905425.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Refseq | XP_019701922.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_019701923.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_019701924.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_019701925.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_019701926.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_019701927.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_019701929.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_029116906.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_029116907.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Refseq | XP_029116908.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Swissprot | Q84JP1 | 1e-49 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2H3X503 | 1e-115 | A0A2H3X503_PHODC; nuclear transcription factor Y subunit A-7-like isoform X3 | ||||
STRING | XP_008794453.1 | 1e-94 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 5e-52 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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