PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905299.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 538aa    MW: 59990 Da    PI: 6.4249
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905299.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.81.6e-1401685381374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+av+++d   +++l+++l++++s +g+p+qRl ay++e+L a+l++s+s +ykal+++e +   sse l+++++++ev+P++kf++
  XP_010905299.1 168 LKQMLIACARAVAENDILVVEWLISELRQMVSVSGEPIQRLGAYMLEGLVAKLSSSGSAIYKALRCKEPT---SSELLSYMHILYEVCPYFKFGY 259
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI eav+ge++vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg++++ s   +   l+ +g+rL+++A++++vpfef++ +a +  d
  XP_010905299.1 260 MSANGAIAEAVKGENMVHIIDFQIAQGSQWMTLIQALAARPGGPPCLRITGIDDSVSAyaRGGGLHLVGQRLSRLAQACNVPFEFHA-AAISGCD 353
                     ******************************************************888899999************************.88899** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L v+pgEalaVn+++qlh+++desvs++++rd++L++vkslsPkvv++veqea++n+++F+ rfle+l+yysa+f+s++++lpre++eri
  XP_010905299.1 354 VELEHLGVRPGEALAVNFAFQLHHMPDESVSTRNHRDRLLRMVKSLSPKVVTLVEQEANTNTAPFFPRFLETLDYYSAMFESIDVTLPRENKERI 448
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++acegaer+erhe ++kWr+r+++aGFkp pls  +++++k+ll+++  + yr+ee++g l+lgWk+r+Lv+ +aWr
  XP_010905299.1 449 SVEQHCLARDIVNIIACEGAERVERHELFGKWRSRFTMAGFKPHPLSPLVNATIKTLLENYC-EHYRLEERDGVLYLGWKNRALVVSCAWR 538
                     *************************************************************9.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.284142519IPR005202Transcription factor GRAS
PfamPF035145.6E-138168538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MQASERDKHS NKSQKPYHPH NSMPVREAES HFLSQNHQSL NYVSSDDGSS QRNVHPHTSG  60
QFCTLESSLA TPGYATHNSP SSLAFSPNSG SPLSQQECQS DNTYGSPISV SCITEDPNDL  120
KLKLRELETA MLGPDPDIVE SFETTYPSNT SMDPEKWRQV MGIPRGDLKQ MLIACARAVA  180
ENDILVVEWL ISELRQMVSV SGEPIQRLGA YMLEGLVAKL SSSGSAIYKA LRCKEPTSSE  240
LLSYMHILYE VCPYFKFGYM SANGAIAEAV KGENMVHIID FQIAQGSQWM TLIQALAARP  300
GGPPCLRITG IDDSVSAYAR GGGLHLVGQR LSRLAQACNV PFEFHAAAIS GCDVELEHLG  360
VRPGEALAVN FAFQLHHMPD ESVSTRNHRD RLLRMVKSLS PKVVTLVEQE ANTNTAPFFP  420
RFLETLDYYS AMFESIDVTL PRENKERISV EQHCLARDIV NIIACEGAER VERHELFGKW  480
RSRFTMAGFK PHPLSPLVNA TIKTLLENYC EHYRLEERDG VLYLGWKNRA LVVSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-621705386375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116878.10.0scarecrow-like protein 21
RefseqXP_029116879.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2H3YLP10.0A0A2H3YLP1_PHODC; LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 2-like
STRINGXP_008800637.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]