PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905290.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 461aa    MW: 50331.5 Da    PI: 5.1583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905290.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.34.8e-92594582373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn...sseelaalkl..fsevsP 89 
                     ++lLl+cA+a++++d++laq+l++ l+++a pdgd++qRl+a f+ AL ar ++  s  ++  a+++ + ++ +   ++++++a+ l  f++++P
  XP_010905290.1  59 EQLLLHCADAIEANDATLAQQLIWVLHNIAPPDGDSNQRLTAAFLHALIARASKtgS-CNMLGAVAAAHPADADlalHTHRFSAVDLvsFVDLTP 152
                     79***************************************************9422.2334444444444444566666777777799****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfe 177
                     +++f++ +aN aI eaveg   +Hi+D++ ++++Q p+L++ La Rpegpp lR+T  ++ ++           ++ e+g +L +fA++ +v +e
  XP_010905290.1 153 WHRFGYSAANAAIAEAVEGFPVIHIVDLSTTHCMQIPTLIDLLAGRPEGPPILRLTIPSPTAAAttmpppiLDLSYDELGAKLVNFARSKNVAME 247
                     ********************************************************87776655888998888999******************* PP

            GRAS 178 fnvlvakrledle..leeLrvkp.....gEalaVnlvlqlhrll..........desvsles...erdevLklvkslsPkvvvvveqeadhnses 252
                     f+v+ ++ +++++  +e+Lrv++     gEal+Vn++++lh+++              s++s    r+++Lk+++sl+P++v++v+++ad ++++
  XP_010905290.1 248 FRVIPSNPCDAFDtlIEQLRVQQlvsdgGEALIVNCQMMLHYIPdetagaisstM---SMTSsisLRSAFLKVLRSLEPTLVTLVDEDADFTAGD 339
                     ***9444444332115666666666666****************77777775442...2322444788*************************** PP

            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                      + r+ +a++y +  +d++++ lp+ se+r ++E+  ++++i+nv+a+eg +r+er e++++W +r+++aGF+ v +se+a+ ++k +l++++  
  XP_010905290.1 340 VVGRLRSAFNYLWIPYDAVDTFLPKGSEQREWYEAG-VRWKIENVIAHEGLQRVERLESKGRWAQRMRAAGFRGVGFSEEAVGEVKGMLEEHS-A 432
                     ************************************.9******************************************************9.8 PP

            GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                     g+ ++ e++ +vl+Wk++++v+++aW
  XP_010905290.1 433 GWGLKREEEDFVLTWKGHNVVFATAW 458
                     999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.55932440IPR005202Transcription factor GRAS
PfamPF035141.7E-8959458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MMQFGESAPP SPPLINLNGQ ALRLDLTPPE APLHRPRPWP GFPISSKSLG SFNTAGCMEQ  60
LLLHCADAIE ANDATLAQQL IWVLHNIAPP DGDSNQRLTA AFLHALIARA SKTGSCNMLG  120
AVAAAHPADA DLALHTHRFS AVDLVSFVDL TPWHRFGYSA ANAAIAEAVE GFPVIHIVDL  180
STTHCMQIPT LIDLLAGRPE GPPILRLTIP SPTAAATTMP PPILDLSYDE LGAKLVNFAR  240
SKNVAMEFRV IPSNPCDAFD TLIEQLRVQQ LVSDGGEALI VNCQMMLHYI PDETAGAISS  300
TMSMTSSISL RSAFLKVLRS LEPTLVTLVD EDADFTAGDV VGRLRSAFNY LWIPYDAVDT  360
FLPKGSEQRE WYEAGVRWKI ENVIAHEGLQ RVERLESKGR WAQRMRAAGF RGVGFSEEAV  420
GEVKGMLEEH SAGWGLKREE EDFVLTWKGH NVVFATAWVP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-485946188475Protein SHORT-ROOT
5b3h_B3e-485946134421Protein SHORT-ROOT
5b3h_E3e-485946134421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116868.10.0scarecrow-like protein 32
SwissprotQ9SN221e-161SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2H3ZNQ80.0A0A2H3ZNQ8_PHODC; scarecrow-like protein 32
STRINGXP_008787220.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-152GRAS family protein