PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905214.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 314aa    MW: 35464.1 Da    PI: 6.3845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905214.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11131174755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR r+++++ eLr+l+P+      +K++Ka+i   Av Y+++Lq
  XP_010905214.1 131 ISERRRRGRMKEKLYELRSLVPNI-----TKMDKASIIADAVGYVQNLQ 174
                     78*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15126189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-12126178No hitNo description
SMARTSM003531.4E-13130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-9130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDYYLFHTP QTLFMDSIPH DLMNNNTFDA TITDYDHVFN EFMLFGNEYD GHGLWLKSEN  60
MFNGEGKGTS NSGLRINAVE DSSDIYLSVD GNAPTSRVVK ESPEEKQGDG NSSGRTTRVA  120
KLRRDRSKTL ISERRRRGRM KEKLYELRSL VPNITKMDKA SIIADAVGYV QNLQRQARKL  180
AEEIRLLESS SKVDQLSGIL SENSRKASQV DQGRSNPVGG KVLQLMAFEV RKGRFYVRLE  240
CSKNEGVSSS LYTAIESLGC FHLESSNISI ASEIFVLTLN VRGFMEEMNV STLKLWVMGA  300
IFKEGFEFEM TAIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905214.20.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A2H3X8D71e-179A0A2H3X8D7_PHODC; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGXP_008779846.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-58FER-like regulator of iron uptake