PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905158.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 514aa MW: 54957.6 Da PI: 6.1023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905158.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	320	367	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010905158.1 320 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 367 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.64E-17	314	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.50E-11	314	371	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-17	316	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.535	316	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	320	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-11	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MNCGPPPDQL RPCFLNLNWE QSMDPTGHFE SALSSIVSSP SSNSPVPAEG LAVNNLVGRL 60 ASVYNCGEEI SPRSHHMGAP LNSPPKLNLS MMGYLGHQQP AIGGLPFPAN PIPVAHLDEL 120 SADPGFAKRA ARFSCFDGRN YSGLAGQFGL PRASSSQSLK ATGPQMGLPE SGKAIQTQEG 180 KQLEANDAEF GNAREESSVS DPISAGGEVS LRGAGENNPR KRKAAPKGKG KDTALPNSAI 240 DPPKAAEEED PNAKKSRFAE DDGIDKESIN PKVEQNGSGS GSASGDGGAQ KQGKENNVKP 300 LEPPKDYIHV RARRGQATDS HSLAERVRRE KISQRMKLLQ DLVPGCNKVT GKAVMLDEII 360 NYVQSLQRQV EFLSMKLATV NPRLDFNNVA DLLPKDMHQT CGPVLNSVYP LETSGAALSY 420 TSQLQQGAPL HCVVTSALET QCTVNPLDPT LCRTLSSHQP FINGFGDASS QMGTFWEDDL 480 QSVVPMDLGQ NQEIAVSSQS FHGPLPTAHM KIEL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MNCGPPPDQL RPCFLNLNWE QSMDPTGHFE SALSSIVSSP SSNSPVPAEG LAVNNLVGRL  60
ASVYNCGEEI SPRSHHMGAP LNSPPKLNLS MMGYLGHQQP AIGGLPFPAN PIPVAHLDEL  120
SADPGFAKRA ARFSCFDGRN YSGLAGQFGL PRASSSQSLK ATGPQMGLPE SGKAIQTQEG  180
KQLEANDAEF GNAREESSVS DPISAGGEVS LRGAGENNPR KRKAAPKGKG KDTALPNSAI  240
DPPKAAEEED PNAKKSRFAE DDGIDKESIN PKVEQNGSGS GSASGDGGAQ KQGKENNVKP  300
LEPPKDYIHV RARRGQATDS HSLAERVRRE KISQRMKLLQ DLVPGCNKVT GKAVMLDEII  360
NYVQSLQRQV EFLSMKLATV NPRLDFNNVA DLLPKDMHQT CGPVLNSVYP LETSGAALSY  420
TSQLQQGAPL HCVVTSALET QCTVNPLDPT LCRTLSSHQP FINGFGDASS QMGTFWEDDL  480
QSVVPMDLGQ NQEIAVSSQS FHGPLPTAHM KIEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905158.1	0.0	transcription factor bHLH62
TrEMBL	A0A2H3Y3N0	0.0	A0A2H3Y3N0_PHODC; transcription factor bHLH62-like
STRING	XP_008799570.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-68	bHLH family protein