PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904901.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 428aa    MW: 46959.4 Da    PI: 6.4546
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904901.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27153207156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH+rFv+aveqL G +kA+P++ilelm+++ Lt+++v+SHLQkYR++
  XP_010904901.1 153 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDRLTRHNVASHLQKYRSH 207
                     5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.053150209IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-27151209IPR009057Homeodomain-like
SuperFamilySSF466895.55E-18151209IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26153207IPR006447Myb domain, plants
PfamPF002494.1E-9156205IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLPVSPLRSS NEEERDGEVG GMVGDFSGDI VLEDINFDDF FMGFDDGEIL PVLEVDPAEI  60
FVEFSEGGEE DSSGMAISVE STVDSDGGGQ QKGSLEGEMK VEKDISRREE VIAATTKEDP  120
GTMTAEIRSP SSEVNRGGKS SAVATKNSQV KRKVKVDWTP ELHRRFVQAV EQLGVDKAVP  180
SRILELMGID RLTRHNVASH LQKYRSHRKY LLARDAEAAS RSQRRRMHAA SGATARRDMN  240
PWLAPIIGFP APLPLPPPPP PPLFQPFRTL RVWGHPTVDP PLVPMWPRNL TSWSHTPPWA  300
PQPSQPPPQN PPYWHHHYQK GCRVPYVLTQ GTPCFPQALP TTFPAPPVPG VLPHPFYRPV  360
VPPPASKHLG SQLPLDVYPP NEHVDAAVGD VLAKRLLPLP LGLKPPSLES VLVELQGRGV  420
SIIPATSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-17151205357ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904901.10.0probable transcription factor GLK1
SwissprotQ5Z5I44e-80GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A2H3XCZ40.0A0A2H3XCZ4_PHODC; probable transcription factor GLK1
STRINGXP_008781857.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.17e-61GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]