PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904660.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 560aa    MW: 61548.6 Da    PI: 6.6894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904660.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.64e-17350396455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  XP_010904660.1 350 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 396
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-21343411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-21343403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.501346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-17349400No hitNo description
PfamPF000101.5E-14350396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-19352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MNHYVPHWNL EDETTSFGGL PATNQKKTIW PDNELVELLW QDGRVIMHSQ THRKSPPTVG  60
EFKQAQKAEP ASKCRGALGN SSNLSQEDET ASWFQHSLDD SLEKEFSEFF CETPNVDAIG  120
SSKMTKDVTE EGERSTNFGA NEETNVFAAS DPKQSRICFK ENTMPPPKSH IIASTQQASC  180
LANSNLVNFS HFTRPRPVMA DVGSLNGQLG KESGKRIRAG AVESTSTMTI ASSICESNQI  240
QAQADPSHTI SSDAAGVVVR GLKEDAQMTS LSERTRTNTY EATVTSSSGG SGCSFGRTGQ  300
QSAINQSHKR KGRDAEEYES QSEEADYEYV EANKLAQRSA LPRRSRSAEV HNLSERRRRD  360
RINEKMKALQ ELIPHCNKTD KASMLDEAIE YLKSLQLQVQ IMWMGSGMAP MMFPAVQQCM  420
SRIGMGVGHA SMPSMHGPVQ LPRVPFLNQS IASASTAHQT PLCLSTALNA LNFPNQMQNI  480
HLPGSYAPYL GFHHMQASSQ EMNCCTYGSH MVQQNPTTAV PSSSIFPTAG EVPAENNQNN  540
KSGSCKWFTF SGSLQYPSTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904660.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform X7
TrEMBLA0A2H3ZCM60.0A0A2H3ZCM6_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X5
TrEMBLA0A2H3ZCN90.0A0A2H3ZCN9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X6
STRINGXP_008811817.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-43phytochrome interacting factor 3-like 5