PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904655.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 572aa    MW: 63011.2 Da    PI: 6.848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904655.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.7e-16350408455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkas......kapskK.lsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++       + +++   +Ka++L +A+eY+ksLq
  XP_010904655.1 350 VHNLSERRRRDRINEKMKALQELIPHCNkllysrNIGHRHdTDKASMLDEAIEYLKSLQ 408
                     6*************************888****96677777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.7E-19343415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-18343423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06346407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-15349412No hitNo description
PfamPF000102.2E-13350408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-16352413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MNHYVPHWNL EDETTSFGGL PATNQKKTIW PDNELVELLW QDGRVIMHSQ THRKSPPTVG  60
EFKQAQKAEP ASKCRGALGN SSNLSQEDET ASWFQHSLDD SLEKEFSEFF CETPNVDAIG  120
SSKMTKDVTE EGERSTNFGA NEETNVFAAS DPKQSRICFK ENTMPPPKSH IIASTQQASC  180
LANSNLVNFS HFTRPRPVMA DVGSLNGQLG KESGKRIRAG AVESTSTMTI ASSICESNQI  240
QAQADPSHTI SSDAAGVVVR GLKEDAQMTS LSERTRTNTY EATVTSSSGG SGCSFGRTGQ  300
QSAINQSHKR KGRDAEEYES QSEEADYEYV EANKLAQRSA LPRRSRSAEV HNLSERRRRD  360
RINEKMKALQ ELIPHCNKLL YSRNIGHRHD TDKASMLDEA IEYLKSLQLQ VQIMWMGSGM  420
APMMFPAVQQ CMSRIGMGVG HASMPSMHGP VQLPRVPFLN QSIASASTAH QTPLCLSTAL  480
NALNFPNQMQ NIHLPGSYAP YLGFHHMQAS SQEMNCCTYG SHMVQQNPTT AVPSSSIFPT  540
AGEVPAENNQ NNKSGSCKWF TFSGSLQYPS TQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904655.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform X2
TrEMBLA0A2H3ZCN90.0A0A2H3ZCN9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X6
STRINGXP_008811817.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-40phytochrome interacting factor 3-like 5