PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559235.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 309aa    MW: 34745.9 Da    PI: 6.9242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.6e-13227252126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+y d+C+FaHg
  XP_010559235.1 227 WKTELCNKWQETGACPYDDNCQFAHG 252
                     8************************8 PP
2zf-CCCH18.24.4e-06265289125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ykte Cr  +++  C+yG rC+F H
  XP_010559235.1 265 YKTEVCRMVLAGDMCPYGHRCHFRH 289
                     9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-18221259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-11223258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99226254IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-8226253IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10227252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-12260293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-8260295IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821264292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MENEIAPITY GGSSASVAGI MQLQGEQSCG AVSPSFYSDQ LYQSSREVMQ QYQDMVNRHA  60
LCLTRLREAS LEAESLRLQN SKLRSMNREL SQQLNLLIRS SVQSHIDYNT TSFQMLNELS  120
NLSIGGNDIG EGEDQNRWDE FNDESPTSVM ENTDLERSSL PKSISVRSSG YLKVSQGGGT  180
SHVGKSRGAT TKPGPSGQLS TTQKVYLRGG KKEDERIELE VYNQGMWKTE LCNKWQETGA  240
CPYDDNCQFA HGIQELRPVI RHPRYKTEVC RMVLAGDMCP YGHRCHFRHA LTEQEKLMSS  300
FKAKPVKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-22227293470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559234.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_010559235.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-124C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLR0GI951e-138R0GI95_9BRAS; Uncharacterized protein
STRINGXP_010559234.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-127C3H family protein