PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 975aa MW: 108323 Da PI: 6.3264

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.9e-42	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_010559171.1 152 VCQVENCGADLSRVKDYHRRHKVCEMHSKASSALVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 229 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.5E-34	147	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.599	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-39	151	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-30	153	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.48E-8	751	854	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.2E-7	752	856	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.08E-9	753	854	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence Send to blast
MEDRVEGEAH RFYGVSAMDL RAVGKRIAEW DSNDWKWDGD LFVARQLNPG SSETMGRQFF 60 PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRGLDKKRR AVVIEDNNLR DDAGSLTLKL 120 CGHGYPAGDR ETLDINGAKA TKAGGSVPSR AVCQVENCGA DLSRVKDYHR RHKVCEMHSK 180 ASSALVGGIM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNGNPLGD 240 DQTSSYLLIN LLKVLSNMHS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN IDGLLQGRVQ 300 SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQEVYVDV TRGAEGVNCS PKRVRVNDFD 360 LNDIYIDSDD GTVDVERSPP MNPTTSSLDY PSWIRQESHQ SSPPQTLQAE PQQKQILKHV 420 SGHSSSIDAQ GRTDRIVFKL FGKEPNDFPV VLRGQILDWL SHSPTDMESY IRPGCIVLTI 480 YLRQAEGAWE ELCSDLGFSL RRLLDLSDDP FWTDGLIYVR VQNQIAFALN GQVVVDTSLP 540 LRSRNCSQIF CVRPIAVAAT GRIQFTVRGT NLRKPGTRLL CAVEGKYLVQ EATLESMDGN 600 DDLEEENNEV ECIEFSCDMP AASGRGFMEV EDNGLSCSFF PFIVVEDDVC SEIRMLESTL 660 EFTGTDSAKQ AMDFIHEIGW LLHRSKLNSR LGQESKPNGN LFPLRRFKWL IEFSMDHDWC 720 AVIKKLLTIL FDGTVGSEQG PSSDSALSEL CLLHRAVRKN SRPMVEMLLR YGPKEQNLLG 780 NEIRLFRPDA TGPAGLTPIH IAAGKDGSED VLDALTEDPG MVGLEAWKNS RDSTGFTPED 840 YARLRGHFSY IHLIQRKLKK KSTTEEHAVV VDIPLSFPDT AIEKSHQKQK TGLRPSGLEI 900 ALANQAKSSH CKLCDQKMAY GFGPAVRSVA YRPAMLSMVA IAAVCVCVAL LFKSCPEVLY 960 VFQPFRWELL AYGTS

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence Send to blast

MEDRVEGEAH RFYGVSAMDL RAVGKRIAEW DSNDWKWDGD LFVARQLNPG SSETMGRQFF  60
PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRGLDKKRR AVVIEDNNLR DDAGSLTLKL  120
CGHGYPAGDR ETLDINGAKA TKAGGSVPSR AVCQVENCGA DLSRVKDYHR RHKVCEMHSK  180
ASSALVGGIM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNGNPLGD  240
DQTSSYLLIN LLKVLSNMHS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN IDGLLQGRVQ  300
SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQEVYVDV TRGAEGVNCS PKRVRVNDFD  360
LNDIYIDSDD GTVDVERSPP MNPTTSSLDY PSWIRQESHQ SSPPQTLQAE PQQKQILKHV  420
SGHSSSIDAQ GRTDRIVFKL FGKEPNDFPV VLRGQILDWL SHSPTDMESY IRPGCIVLTI  480
YLRQAEGAWE ELCSDLGFSL RRLLDLSDDP FWTDGLIYVR VQNQIAFALN GQVVVDTSLP  540
LRSRNCSQIF CVRPIAVAAT GRIQFTVRGT NLRKPGTRLL CAVEGKYLVQ EATLESMDGN  600
DDLEEENNEV ECIEFSCDMP AASGRGFMEV EDNGLSCSFF PFIVVEDDVC SEIRMLESTL  660
EFTGTDSAKQ AMDFIHEIGW LLHRSKLNSR LGQESKPNGN LFPLRRFKWL IEFSMDHDWC  720
AVIKKLLTIL FDGTVGSEQG PSSDSALSEL CLLHRAVRKN SRPMVEMLLR YGPKEQNLLG  780
NEIRLFRPDA TGPAGLTPIH IAAGKDGSED VLDALTEDPG MVGLEAWKNS RDSTGFTPED  840
YARLRGHFSY IHLIQRKLKK KSTTEEHAVV VDIPLSFPDT AIEKSHQKQK TGLRPSGLEI  900
ALANQAKSSH CKLCDQKMAY GFGPAVRSVA YRPAMLSMVA IAAVCVCVAL LFKSCPEVLY  960
VFQPFRWELL AYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-32	152	226	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559171.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559171.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1J3IQZ6	0.0	A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRING	XP_010559171.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]