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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_010559163.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family |
B3 |
| Protein Properties |
Length: 300aa MW: 33706.5 Da PI: 9.0103 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010559163.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 102.6 | 2.1e-32 | 36 | 140 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89
f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ +
XP_010559163.1 36 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGSLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRGvGEiCR 130
89****************************55556777*************************************************65577777 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+l++ + r+
XP_010559163.1 131 NRLFIDWKRR 140
7777777665 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MNLSVTRTQE GLEEEEEGNR LEFGGSSSNI EKEHMFDKVV TPSDVGKLNR LVIPKQHAER 60
YFPLDSSSNE KGSLLNFEDR TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDTVS 120
FQRGVGEICR NRLFIDWKRR PQFPDPTSIP HFAGTMFPRP VVTVPRNYGN FLYQNRHHYQ 180
FPPGSGYGFG DSKGRYYVRS LGRNPAEENT VVHGRAHPFV AATAVGKRLR LFGVDMDCCT 240
DPEESSSSGG SVPRGASGTA FSSSSLQLRL ASSEESSMVE AADDHFSKKG KSSLSFDLHI
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 3e-66 | 31 | 142 | 3 | 115 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 3e-66 | 31 | 142 | 3 | 115 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
Plant Mol. Biol., 2015. 89(4-5): p. 529-38
[PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
FEBS J., 2018. 285(21): p. 4041-4059
[PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
[PMID:30397148]
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