PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558920.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 420aa MW: 46147.1 Da PI: 6.8805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_010558920.1 35 YTCSFCTREFRSAQALGGHMNVH 57 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.66E-6	33	61	No hit	No description
Pfam	PF13912	1.7E-5	34	58	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0056	35	57	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.198	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.40.50.720	1.4E-92	163	414	IPR016040	NAD(P)-binding domain
CDD	cd05329	3.19E-152	165	413	No hit	No description
SuperFamily	SSF51735	1.96E-79	168	413	IPR016040	NAD(P)-binding domain
PRINTS	PR00081	3.7E-38	170	187	IPR002347	Short-chain dehydrogenase/reductase SDR
Pfam	PF13561	5.3E-60	177	411	No hit	No description
PRINTS	PR00080	4.5E-8	245	256	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	3.7E-38	245	256	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	3.7E-38	292	308	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	4.5E-8	298	306	IPR002347	Short-chain dehydrogenase/reductase SDR
PROSITE pattern	PS00061	0	305	333	IPR020904	Short-chain dehydrogenase/reductase, conserved site
PRINTS	PR00080	4.5E-8	318	337	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	3.7E-38	318	337	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	3.7E-38	339	356	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	3.7E-38	374	394	IPR002347	Short-chain dehydrogenase/reductase SDR

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016491	Molecular Function	oxidoreductase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MAVFGPFGAG SREETAFAFA DAEDYSGCVW PLKTYTCSFC TREFRSAQAL GGHMNVHRRD 60 RARLKHNQEA DHQVHVLKTN ILCLVSKNLS EDSRKFDALA EDPAKNQENG EVRTDLSMGL 120 NSELCQKPTT RSYCKRAKPN LIYRHEELDL ELRLGAHYDD KQKGSLAGKS ALVTGGTRGI 180 GRATVEELAG FGARVHTCSR NQEELSQCLD EWKSRGFEVS GSVCDASVSG QRDKLIQEVA 240 SEFSGKLNIL INNVGTNIRK STVEFTDEDF TKLVSTNLES AFHLSQIAHP LLKASGFGSI 300 VFISSVAGVV DVRTGSIYGA TKGGMNQLTR NLACEWASDN IRANCVAPWY IKTPRIEPFL 360 EKKELMDQIV SRTPLERVGE PEEVAALVAF LCLPAASYIT GQVISVDGGF TVNGFNHLLK

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MAVFGPFGAG SREETAFAFA DAEDYSGCVW PLKTYTCSFC TREFRSAQAL GGHMNVHRRD  60
RARLKHNQEA DHQVHVLKTN ILCLVSKNLS EDSRKFDALA EDPAKNQENG EVRTDLSMGL  120
NSELCQKPTT RSYCKRAKPN LIYRHEELDL ELRLGAHYDD KQKGSLAGKS ALVTGGTRGI  180
GRATVEELAG FGARVHTCSR NQEELSQCLD EWKSRGFEVS GSVCDASVSG QRDKLIQEVA  240
SEFSGKLNIL INNVGTNIRK STVEFTDEDF TKLVSTNLES AFHLSQIAHP LLKASGFGSI  300
VFISSVAGVV DVRTGSIYGA TKGGMNQLTR NLACEWASDN IRANCVAPWY IKTPRIEPFL  360
EKKELMDQIV SRTPLERVGE PEEVAALVAF LCLPAASYIT GQVISVDGGF TVNGFNHLLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1xq1_A	1e-115	156	417	2	262	PUTATIVE TROPINONE REDUCATSE
2q45_A	1e-115	156	417	2	262	Putative tropinone reductase homolog At1g07440
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558920.1	0.0	PREDICTED: tropinone reductase homolog At5g06060-like
Swissprot	Q9LHT0	1e-149	TRNHF_ARATH; Tropinone reductase homolog At5g06060
TrEMBL	V4LL57	1e-146	V4LL57_EUTSA; Uncharacterized protein
STRING	XP_010558920.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	7e-26	C2H2 family protein

Publications ? help Back to Top
Persson B, et al. The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. Chem. Biol. Interact., 2009. 178(1-3): p. 94-8 [PMID:19027726]